Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3126

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3126: 11494 - KOG0019 Molecular chaperone (HSP90 family), at 380662 to 381306 11494 mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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379,810 - 1.1
379,834 - 0.3
379,988 + 0.6
379,989 + 0.2
379,991 - 1.3
380,093 - 2.5
380,093 + 0.7
380,113 + -0.3
380,132 + -0.6
380,147 - 1.4
380,294 - -1.8
380,571 + 0.2
380,603 + -0.2
380,720 - 2.7
380,740 + 11494 mRNA_3126 0.12 0.3
380,851 - 11494 mRNA_3126 0.29 0.3
380,854 - 11494 mRNA_3126 0.30 -0.0
380,854 + 11494 mRNA_3126 0.30 -0.6
380,868 + 11494 mRNA_3126 0.32 0.5
380,875 + 11494 mRNA_3126 0.33 -0.1
380,877 + 11494 mRNA_3126 0.33 1.1
380,882 + 11494 mRNA_3126 0.34 0.2
380,888 + 11494 mRNA_3126 0.35 -1.2
380,888 + 11494 mRNA_3126 0.35 0.2
380,935 - 11494 mRNA_3126 0.42 0.8
380,940 + 11494 mRNA_3126 0.43 -1.1
381,015 + 11494 mRNA_3126 0.55 2.2
381,024 - 11494 mRNA_3126 0.56 1.3
381,027 - 11494 mRNA_3126 0.57 -0.3
381,161 - 11494 mRNA_3126 0.77 1.8
381,171 - 11494 mRNA_3126 0.79 0.5
381,173 + 11494 mRNA_3126 0.79 -0.1
381,293 + -1.8
381,458 - 0.8
381,581 + -0.6
381,614 + -0.6
381,833 + 11495 mRNA_3127 0.17 0.6
381,886 + 11495 mRNA_3127 0.19 0.6
381,995 + 11495 mRNA_3127 0.23 0.9
382,017 + 11495 mRNA_3127 0.23 0.9
382,179 + 11495 mRNA_3127 0.29 -0.1
382,184 + 11495 mRNA_3127 0.29 -2.0