Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3125

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3124: 11492 - K04079 HSP90A, htpG molecular chaperone HtpG, at 373558 to 376751 11492 mRNA_3125: 11493 - K08145 SLC2A8, GLUT8 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8, at 377288 to 379485 11493

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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376,294 + 11492 mRNA_3124 0.86 -0.1
376,446 - -0.4
376,492 - 0.1
376,597 + 1.4
376,703 + -0.5
376,715 - -1.8
376,737 + -0.4
376,748 + 0.1
376,871 - 0.9
376,878 - 0.5
376,916 - -1.6
376,917 + 1.7
376,922 + -0.4
376,989 - 1.3
377,034 - -0.3
377,035 + 0.2
377,046 - 0.6
377,048 + 0.7
377,181 - 2.0
377,182 - 0.7
377,188 + 0.7
377,810 + 11493 mRNA_3125 0.24 0.5
378,211 + 11493 mRNA_3125 0.42 2.0
378,431 + 11493 mRNA_3125 0.52 1.0
378,876 + 11493 mRNA_3125 0.72 0.1
378,915 - 11493 mRNA_3125 0.74 2.3
378,971 - 11493 mRNA_3125 0.77 0.0
379,142 - 11493 mRNA_3125 0.84 2.3
379,146 + 11493 mRNA_3125 0.85 0.8
379,271 + -0.0
379,393 + -0.9
379,506 - 1.6
379,511 - 1.0
379,520 + 0.2
379,528 + -0.1
379,655 - 2.0
379,810 - 1.1
379,834 - 0.3
379,988 + 0.6
379,989 + 0.2
379,991 - 1.3
380,093 - 2.5
380,093 + 0.7
380,113 + -0.3
380,132 + -0.6
380,147 - 1.4
380,294 - -1.8