Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3119

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486 mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362785 to 367104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367437 to 369368 11488

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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362,107 - 0.3
362,201 - 2.1
362,417 - 0.8
362,461 + -0.4
362,669 - -0.4
362,684 + 1.0
362,753 + -0.1
362,863 + 0.1
362,910 + 1.1
362,970 + 2.1
363,030 + 1.5
363,349 + 11487 mRNA_3119 0.13 0.1
363,462 + 11487 mRNA_3119 0.16 -1.1
363,847 - 11487 mRNA_3119 0.25 0.7
363,963 - 11487 mRNA_3119 0.27 0.1
364,104 + 11487 mRNA_3119 0.31 1.3
364,143 - 11487 mRNA_3119 0.31 0.1
364,194 - 11487 mRNA_3119 0.33 1.0
364,378 - 11487 mRNA_3119 0.37 0.3
364,385 + 11487 mRNA_3119 0.37 -0.2
364,469 - 11487 mRNA_3119 0.39 0.3
364,518 - 11487 mRNA_3119 0.40 -0.4
364,560 + 11487 mRNA_3119 0.41 0.1
364,814 - 11487 mRNA_3119 0.47 0.7
364,932 - 11487 mRNA_3119 0.50 -0.9
364,954 + 11487 mRNA_3119 0.50 3.0
365,154 - 11487 mRNA_3119 0.55 2.0
365,243 + 11487 mRNA_3119 0.57 -3.4
365,259 - 11487 mRNA_3119 0.57 -0.3
365,390 - 11487 mRNA_3119 0.60 1.1
365,424 - 11487 mRNA_3119 0.61 1.1
365,447 - 11487 mRNA_3119 0.62 0.0
365,637 - 11487 mRNA_3119 0.66 -0.1
366,070 + 11487 mRNA_3119 0.76 1.0
366,222 - 11487 mRNA_3119 0.80 1.6
366,307 + 11487 mRNA_3119 0.82 0.8
366,416 - 11487 mRNA_3119 0.84 -1.6
366,560 + 11487 mRNA_3119 0.87 1.0
366,566 + 11487 mRNA_3119 0.88 0.0
366,729 + 0.1
366,856 + -0.1
366,994 - -1.5
366,995 - 1.4
367,159 + 0.1
367,164 + 0.4
367,165 + -0.2
367,167 + 0.5
367,198 - 0.5
367,201 - 0.7
367,207 + 0.4
367,211 + 0.4
367,317 - 0.3
367,318 + 1.2
367,326 - -1.0
367,329 - -0.4
367,473 - -0.3
367,478 - 0.5
367,501 + -1.8
367,603 - 0.7
367,763 - 11488 mRNA_3120 0.17 0.1
367,924 - 11488 mRNA_3120 0.25 0.4
367,933 + 11488 mRNA_3120 0.26 0.3
367,936 + 11488 mRNA_3120 0.26 1.3
367,990 - 11488 mRNA_3120 0.29 1.6
368,006 + 11488 mRNA_3120 0.29 -1.6
368,074 - 11488 mRNA_3120 0.33 0.2