Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3114

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3113: 11481 - K11361 SPT20, ADA5 transcription factor SPT20, at 352715 to 353874 11481 mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354324 to 355899 11482 mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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353,347 - 11481 mRNA_3113 0.54 -0.1
353,364 + 11481 mRNA_3113 0.56 1.3
353,502 + 11481 mRNA_3113 0.68 -0.9
353,507 - 11481 mRNA_3113 0.68 0.0
353,537 - 11481 mRNA_3113 0.71 -0.7
353,604 + 11481 mRNA_3113 0.77 2.3
353,668 + 11481 mRNA_3113 0.82 1.1
353,774 - 0.3
353,781 + 1.2
353,783 - -0.5
353,795 - 1.9
353,805 + 0.4
353,967 + 0.9
353,976 + 2.3
354,041 - 0.5
354,076 - -0.8
354,078 - 0.7
354,083 + 0.2
354,087 - 2.0
354,089 + 1.2
354,091 + 0.1
354,094 - 0.1
354,097 + -0.2
354,100 + -0.4
354,101 - 2.0
354,103 + 0.1
354,223 - 0.2
354,248 + -1.1
354,266 + 0.4
354,519 - 11482 mRNA_3114 0.12 0.5
354,538 + 11482 mRNA_3114 0.14 2.2
354,557 - 11482 mRNA_3114 0.15 1.8
354,670 - 11482 mRNA_3114 0.22 1.3
354,949 + 11482 mRNA_3114 0.40 0.2
355,112 - 11482 mRNA_3114 0.50 -0.5
355,242 + 11482 mRNA_3114 0.58 -0.1
355,382 + 11482 mRNA_3114 0.67 0.0
355,531 - 11482 mRNA_3114 0.77 -0.1
355,534 - 11482 mRNA_3114 0.77 1.2
355,542 - 11482 mRNA_3114 0.77 0.7
355,547 + 11482 mRNA_3114 0.78 0.1
355,807 + 3.3
355,826 + 0.3
355,832 + 1.1
355,971 - -0.2
355,978 + 1.3
355,981 + 0.9
355,982 + -1.0
356,010 + 0.9
356,111 - -0.2
356,130 + -0.1
356,131 + 2.5
356,259 - 11483 mRNA_3115 0.11 -1.6
356,262 - 11483 mRNA_3115 0.11 1.4
356,282 - 11483 mRNA_3115 0.14 -0.5
356,358 - 11483 mRNA_3115 0.24 1.5
356,415 + 11483 mRNA_3115 0.32 0.8
356,571 + 11483 mRNA_3115 0.53 -0.5
356,577 + 11483 mRNA_3115 0.54 1.0
356,579 + 11483 mRNA_3115 0.54 -1.1
356,732 - 11483 mRNA_3115 0.75 -0.4
356,839 - -0.5