Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3106

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334494 to 336059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336211 to 338758 11474 mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339155 to 340730 11475

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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335,744 + 11473 mRNA_3105 0.80 -0.0
335,862 - 11473 mRNA_3105 0.87 -1.0
336,033 + -0.5
336,033 - -0.5
336,034 - 0.2
336,036 + 0.3
336,061 - -0.4
336,077 + 0.8
336,140 - 2.7
336,147 - -0.1
336,159 - -0.3
336,161 - -0.3
336,170 - -1.0
336,173 + 0.3
336,175 - -0.3
336,178 + 1.7
336,187 - 1.1
336,190 + 0.0
336,198 + 0.2
336,205 - 2.4
336,205 + 0.9
336,312 - 0.5
336,323 + -0.1
336,327 + 1.1
336,329 + 0.3
336,341 - 2.2
336,345 + -0.8
336,457 - 0.0
336,459 + 0.7
336,481 - 11474 mRNA_3106 0.11 -1.8
336,485 + 11474 mRNA_3106 0.11 -0.3
336,491 - 11474 mRNA_3106 0.11 0.0
336,634 - 11474 mRNA_3106 0.17 1.0
336,639 + 11474 mRNA_3106 0.17 0.4
336,648 - 11474 mRNA_3106 0.17 1.1
336,649 - 11474 mRNA_3106 0.17 -0.2
336,775 + 11474 mRNA_3106 0.22 0.3
336,787 - 11474 mRNA_3106 0.23 0.8
336,935 + 11474 mRNA_3106 0.28 2.2
337,067 - 11474 mRNA_3106 0.34 -0.4
337,070 - 11474 mRNA_3106 0.34 -0.3
337,070 - 11474 mRNA_3106 0.34 -0.0
337,192 - 11474 mRNA_3106 0.39 -0.1
337,232 + 11474 mRNA_3106 0.40 -0.7
337,614 + 11474 mRNA_3106 0.55 -1.1
337,654 - 11474 mRNA_3106 0.57 -0.3
337,833 + 11474 mRNA_3106 0.64 1.9
337,956 - 11474 mRNA_3106 0.68 -0.9
337,958 + 11474 mRNA_3106 0.69 0.1
337,961 + 11474 mRNA_3106 0.69 1.0
338,104 - 11474 mRNA_3106 0.74 -2.5
338,269 + 11474 mRNA_3106 0.81 0.1
338,282 - 11474 mRNA_3106 0.81 -1.0
338,289 + 11474 mRNA_3106 0.82 2.0
338,382 - 11474 mRNA_3106 0.85 0.2
338,568 - -0.8
338,572 - 1.1
338,691 - 0.1
338,702 - -0.2
338,704 + 0.8
338,729 + 1.3
338,811 + 0.6
338,850 - 1.5
339,011 + 0.8
339,016 - 1.5
339,021 - 2.2
339,152 - -0.9
339,300 + 0.0
339,310 + -0.3
339,565 - 11475 mRNA_3107 0.26 -0.8