Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3105

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334494 to 336059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336211 to 338758 11474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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333,499 - 0.2
333,500 + -0.3
333,501 + 0.2
333,501 + 0.1
333,502 + 1.3
333,514 + 1.5
333,516 - 1.0
333,518 - -1.4
333,519 + -0.6
333,520 + 0.4
333,523 - 0.7
333,523 + -0.6
333,532 - -0.2
333,537 + -0.8
333,554 - 0.7
333,582 + 0.4
333,646 - -1.0
333,648 - 0.1
333,653 + 0.6
333,657 + 1.2
333,657 + -0.8
333,662 + -0.1
333,663 - 1.6
333,663 - 2.2
333,664 - 0.0
333,664 + -0.9
333,665 + -0.9
333,666 - -0.7
333,667 - 0.5
333,674 - -1.6
333,675 - -1.0
333,676 - 1.0
333,676 + -0.5
333,676 + -2.4
333,681 - 0.1
333,705 + 1.4
333,706 - -0.1
333,706 - 2.3
333,706 - 1.4
333,706 - 0.0
333,707 - -0.8
333,708 - -0.5
333,708 - 0.7
333,708 - -0.4
333,718 + 1.2
333,718 - 0.2
333,720 - 2.4
333,729 - -0.3
333,730 - 0.1
333,733 - 2.2
333,735 + 3.3
333,749 + 0.4
333,754 - -1.1
333,767 - 0.2
333,768 + 0.8
333,783 + -0.2
333,788 + -0.5
333,798 + 0.8
333,843 + 1.0
333,889 - 1.4
333,889 - -0.3
333,905 - 2.1
333,905 - -0.5
333,906 + -1.7
333,910 - -1.9
333,914 - -0.0
333,915 + -0.6
333,920 + -1.4
333,923 + 1.6
333,925 - -0.0
333,929 + -0.3
333,968 + 0.6
334,021 + 0.0
334,045 - -0.0
334,073 + 0.9
334,086 - 0.5
334,088 + -2.2
334,089 + -1.5
334,107 + 0.4
334,117 + 0.2
334,195 - 0.8
334,207 - 0.1
334,214 - 0.2
334,214 - 0.1
334,217 - 0.4
334,225 + -0.2
334,227 + -0.1
334,228 + -0.5
334,234 - 1.0
334,246 - 2.5
334,248 - -0.5
334,249 + 1.1
334,253 - -0.3
334,259 + -0.3
334,380 + 1.3
334,392 - 0.5
334,427 + 1.0
334,519 - -0.6
334,521 - -0.2
334,523 - -0.8
334,526 + -0.5
334,552 + -0.2
334,555 + 0.9
334,835 + 11473 mRNA_3105 0.22 2.3
334,970 + 11473 mRNA_3105 0.30 0.1
334,970 - 11473 mRNA_3105 0.30 -0.2
334,983 - 11473 mRNA_3105 0.31 0.6
335,142 - 11473 mRNA_3105 0.41 1.7
335,163 - 11473 mRNA_3105 0.43 0.1
335,744 + 11473 mRNA_3105 0.80 -0.0
335,862 - 11473 mRNA_3105 0.87 -1.0
336,033 + -0.5
336,033 - -0.5
336,034 - 0.2
336,036 + 0.3
336,061 - -0.4
336,077 + 0.8
336,140 - 2.7
336,147 - -0.1
336,159 - -0.3
336,161 - -0.3
336,170 - -1.0
336,173 + 0.3
336,175 - -0.3
336,178 + 1.7
336,187 - 1.1
336,190 + 0.0
336,198 + 0.2
336,205 - 2.4
336,205 + 0.9
336,312 - 0.5
336,323 + -0.1
336,327 + 1.1
336,329 + 0.3
336,341 - 2.2
336,345 + -0.8
336,457 - 0.0
336,459 + 0.7
336,481 - 11474 mRNA_3106 0.11 -1.8
336,485 + 11474 mRNA_3106 0.11 -0.3
336,491 - 11474 mRNA_3106 0.11 0.0
336,634 - 11474 mRNA_3106 0.17 1.0
336,639 + 11474 mRNA_3106 0.17 0.4
336,648 - 11474 mRNA_3106 0.17 1.1
336,649 - 11474 mRNA_3106 0.17 -0.2
336,775 + 11474 mRNA_3106 0.22 0.3
336,787 - 11474 mRNA_3106 0.23 0.8
336,935 + 11474 mRNA_3106 0.28 2.2