Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3091

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294926 to 296826 11458 mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296743 to 299433 11459 mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300048 to 303992 11460

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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295,895 - 11458 mRNA_3090 0.51 0.7
295,975 - 11458 mRNA_3090 0.55 0.2
296,131 - 11458 mRNA_3090 0.63 1.3
296,280 + 11458 mRNA_3090 0.71 -0.2
296,307 + 11458 mRNA_3090 0.73 -0.2
296,441 - 11458 mRNA_3090 0.80 -0.4
296,535 + 11458 mRNA_3090 0.85 0.5
296,585 + 11458 mRNA_3090 0.87 1.1
296,678 - -1.9
296,858 - 1.3
296,877 - 0.9
297,195 - 11459 mRNA_3091 0.17 -0.1
297,324 + 11459 mRNA_3091 0.22 0.8
297,437 - 11459 mRNA_3091 0.26 0.8
297,582 - 11459 mRNA_3091 0.31 1.2
297,582 + 11459 mRNA_3091 0.31 1.1
297,631 + 11459 mRNA_3091 0.33 -1.7
298,048 + 11459 mRNA_3091 0.48 1.3
298,052 - 11459 mRNA_3091 0.49 1.9
298,307 - 11459 mRNA_3091 0.58 0.9
298,493 + 11459 mRNA_3091 0.65 1.5
298,567 + 11459 mRNA_3091 0.68 -0.1
298,903 + 11459 mRNA_3091 0.80 0.0
299,218 + -0.0
299,324 - 1.0
299,349 - 0.7
299,472 + 1.2
299,478 - 0.6
299,512 + 0.5
299,627 - -0.2
299,627 - 0.3
299,627 - 0.0
299,633 + 1.3
299,637 - 1.2
299,638 - 0.7
299,638 + 0.1
299,644 + 0.1
299,644 - -1.2
299,648 + -0.8
299,656 - 1.5
299,656 - 1.0
299,783 + -0.1
299,797 + 0.5
299,906 - -0.9
299,974 + -1.5
300,098 - 0.2
300,099 + -0.1
300,110 + 0.0
300,223 - 0.3
300,228 - -0.0
300,246 + -0.3
300,251 + 0.9
300,349 + -1.4