Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3083

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281026 to 282865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282989 to 283312 11452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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280,042 - 0.7
280,045 + -0.4
280,046 + 1.3
280,053 + 0.9
280,122 + 0.4
280,142 + -0.2
280,143 - 0.2
280,146 + 0.2
280,149 - -0.1
280,149 - 1.0
280,160 + 0.2
280,161 - 0.7
280,163 - -0.1
280,166 - -0.8
280,166 - 2.3
280,169 - -0.7
280,173 + 1.9
280,175 + 1.0
280,178 - 0.6
280,179 - -0.2
280,180 + -0.0
280,182 - -0.1
280,185 + 0.6
280,188 + -0.2
280,190 - 1.8
280,193 - 1.4
280,207 - -0.4
280,213 - 0.6
280,330 - -0.4
280,331 + 2.6
280,344 - 0.2
280,357 + -0.5
280,419 + 1.0
280,462 - -0.1
280,463 - 1.1
280,481 - -1.6
280,495 + -0.3
280,496 + -0.5
280,509 + -0.3
280,624 - -0.7
280,632 + 2.8
280,638 - 1.1
280,668 + -1.6
280,749 + -1.5
280,769 + 0.3
280,795 + -1.4
280,834 + 0.5
280,955 - 0.5
280,959 - 0.5
280,964 + 0.5
281,058 + 0.3
281,065 - 0.4
281,077 - 0.5
281,204 + -0.8
281,356 + 11451 mRNA_3083 0.18 0.3
281,372 + 11451 mRNA_3083 0.19 0.5
281,442 - 11451 mRNA_3083 0.23 -0.7
281,490 + 11451 mRNA_3083 0.25 0.5
281,522 - 11451 mRNA_3083 0.27 2.4
281,564 - 11451 mRNA_3083 0.29 1.0
281,628 - 11451 mRNA_3083 0.33 -1.0
281,634 - 11451 mRNA_3083 0.33 0.5
281,659 + 11451 mRNA_3083 0.34 0.7
281,662 + 11451 mRNA_3083 0.35 0.4
281,690 + 11451 mRNA_3083 0.36 -1.0
281,833 - 11451 mRNA_3083 0.44 -0.1
281,850 - 11451 mRNA_3083 0.45 1.1
281,880 - 11451 mRNA_3083 0.46 2.8
281,883 - 11451 mRNA_3083 0.47 -0.4
281,900 - 11451 mRNA_3083 0.47 -0.2
281,907 - 11451 mRNA_3083 0.48 0.7
281,919 + 11451 mRNA_3083 0.49 -0.1
281,919 - 11451 mRNA_3083 0.49 1.9
281,921 + 11451 mRNA_3083 0.49 0.2
281,940 + 11451 mRNA_3083 0.50 0.3
281,970 - 11451 mRNA_3083 0.51 0.3
281,987 - 11451 mRNA_3083 0.52 1.3
282,014 + 11451 mRNA_3083 0.54 -0.4
282,020 - 11451 mRNA_3083 0.54 -0.1
282,021 - 11451 mRNA_3083 0.54 0.2
282,021 + 11451 mRNA_3083 0.54 0.1
282,024 - 11451 mRNA_3083 0.54 0.9
282,026 - 11451 mRNA_3083 0.54 0.6
282,026 + 11451 mRNA_3083 0.54 -0.8
282,035 - 11451 mRNA_3083 0.55 0.2
282,037 - 11451 mRNA_3083 0.55 -0.7
282,041 - 11451 mRNA_3083 0.55 0.7
282,042 + 11451 mRNA_3083 0.55 4.5
282,045 - 11451 mRNA_3083 0.55 -1.7
282,050 + 11451 mRNA_3083 0.56 1.1
282,059 + 11451 mRNA_3083 0.56 0.7
282,071 - 11451 mRNA_3083 0.57 2.3
282,072 - 11451 mRNA_3083 0.57 -2.3
282,079 - 11451 mRNA_3083 0.57 1.0
282,082 + 11451 mRNA_3083 0.57 -0.5
282,085 - 11451 mRNA_3083 0.58 0.8
282,087 - 11451 mRNA_3083 0.58 0.4
282,087 + 11451 mRNA_3083 0.58 0.1
282,088 + 11451 mRNA_3083 0.58 0.5
282,089 - 11451 mRNA_3083 0.58 -0.5
282,093 + 11451 mRNA_3083 0.58 1.9
282,093 + 11451 mRNA_3083 0.58 0.3
282,100 - 11451 mRNA_3083 0.58 0.3
282,101 + 11451 mRNA_3083 0.58 2.5
282,106 + 11451 mRNA_3083 0.59 -0.4
282,109 + 11451 mRNA_3083 0.59 0.2
282,117 + 11451 mRNA_3083 0.59 -0.4
282,132 - 11451 mRNA_3083 0.60 1.1
282,136 + 11451 mRNA_3083 0.60 1.8
282,136 + 11451 mRNA_3083 0.60 -0.7
282,137 - 11451 mRNA_3083 0.60 -1.4
282,142 + 11451 mRNA_3083 0.61 -0.1
282,143 + 11451 mRNA_3083 0.61 -0.4
282,145 - 11451 mRNA_3083 0.61 -0.4
282,168 - 11451 mRNA_3083 0.62 -0.1
282,169 - 11451 mRNA_3083 0.62 -0.0
282,187 - 11451 mRNA_3083 0.63 0.0
282,201 - 11451 mRNA_3083 0.64 0.9
282,209 - 11451 mRNA_3083 0.64 0.2
282,233 - 11451 mRNA_3083 0.66 0.3
282,241 + 11451 mRNA_3083 0.66 -1.6
282,251 - 11451 mRNA_3083 0.67 0.7
282,260 - 11451 mRNA_3083 0.67 -0.2
282,338 - 11451 mRNA_3083 0.71 2.6
282,338 + 11451 mRNA_3083 0.71 0.8
282,340 + 11451 mRNA_3083 0.71 2.1
282,359 + 11451 mRNA_3083 0.72 0.6
282,367 - 11451 mRNA_3083 0.73 -0.5
282,367 - 11451 mRNA_3083 0.73 -0.4
282,379 - 11451 mRNA_3083 0.74 -0.5
282,379 - 11451 mRNA_3083 0.74 -0.4
282,385 + 11451 mRNA_3083 0.74 0.2
282,392 + 11451 mRNA_3083 0.74 -1.2
282,411 + 11451 mRNA_3083 0.75 0.3
282,412 + 11451 mRNA_3083 0.75 -0.5
282,412 + 11451 mRNA_3083 0.75 0.7
282,418 + 11451 mRNA_3083 0.76 0.0
282,419 + 11451 mRNA_3083 0.76 -0.1
282,424 + 11451 mRNA_3083 0.76 2.4
282,424 + 11451 mRNA_3083 0.76 -1.1
282,429 - 11451 mRNA_3083 0.76 -1.4
282,452 + 11451 mRNA_3083 0.78 0.7
282,456 + 11451 mRNA_3083 0.78 1.0
282,457 + 11451 mRNA_3083 0.78 1.5
282,469 + 11451 mRNA_3083 0.78 0.4
282,482 + 11451 mRNA_3083 0.79 1.4
282,486 - 11451 mRNA_3083 0.79 0.2
282,540 - 11451 mRNA_3083 0.82 -0.6
282,545 - 11451 mRNA_3083 0.83 0.2
282,552 + 11451 mRNA_3083 0.83 -1.0
282,601 + 11451 mRNA_3083 0.86 0.5
282,616 - 11451 mRNA_3083 0.86 -0.8
282,634 + 11451 mRNA_3083 0.87 0.0
282,642 - 11451 mRNA_3083 0.88 -0.7
282,681 - 11451 mRNA_3083 0.90 0.3
282,694 + 1.3
282,707 - -0.5
282,709 - -0.1
282,709 + -0.4
282,712 - -2.0
282,713 + 1.2
282,718 - -1.8
282,733 - -0.5
282,758 + -0.1
282,761 + 0.7
282,779 + 0.5
282,784 + 0.2
282,861 - 1.5
282,864 - 1.3
282,866 - 1.4
282,906 - 0.7
282,909 + 0.0
282,947 - 1.1
282,953 + 1.1
282,962 - -0.7
282,968 + 0.5
282,995 + 0.1
283,012 - -1.0
283,022 + 11452 mRNA_3084 0.10 -1.5
283,043 - 11452 mRNA_3084 0.17 0.1
283,073 + 11452 mRNA_3084 0.26 0.8
283,099 + 11452 mRNA_3084 0.34 0.3
283,099 + 11452 mRNA_3084 0.34 -0.1
283,102 - 11452 mRNA_3084 0.35 -0.7
283,114 + 11452 mRNA_3084 0.39 -0.7
283,149 + 11452 mRNA_3084 0.49 0.8
283,241 - 11452 mRNA_3084 0.78 0.2
283,251 - 11452 mRNA_3084 0.81 -1.2
283,252 + 11452 mRNA_3084 0.81 0.0
283,271 + 11452 mRNA_3084 0.87 3.1
283,272 + 11452 mRNA_3084 0.87 1.1
283,419 - 0.8
283,531 + 1.1
283,534 + 0.2
283,545 + -1.1
283,545 + -0.7
283,547 - 1.2
283,563 + 1.4
283,580 + 1.1
283,710 + -0.1
283,826 - 2.0
283,827 + 1.0
283,844 + 2.4
283,854 + 1.0
283,858 + 0.3
283,858 + -0.8
283,860 - 1.5
283,861 + 0.3
283,863 - -0.1
283,864 + 0.3
283,865 + 0.3