Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3082

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278441 to 278932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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277,595 + 11449 mRNA_3081 0.86 1.4
277,644 + 11449 mRNA_3081 0.87 0.5
277,673 + 11449 mRNA_3081 0.88 0.1
277,681 - 11449 mRNA_3081 0.89 1.7
277,797 + 1.2
277,797 - -0.2
277,824 + 0.3
277,835 - 1.1
277,836 + -1.5
277,842 + -0.3
277,933 - 2.2
277,960 - -1.2
277,981 + 1.8
277,985 + 0.9
278,083 - 0.3
278,105 - 2.3
278,108 + 1.3
278,135 - 1.0
278,138 + 1.2
278,246 - -0.5
278,263 - -0.4
278,264 - 0.9
278,293 + -1.3
278,402 + -0.1
278,557 - 11450 mRNA_3082 0.24 1.2
278,558 - 11450 mRNA_3082 0.24 -1.3
278,565 + 11450 mRNA_3082 0.25 0.1
278,568 - 11450 mRNA_3082 0.26 1.7
278,704 + 11450 mRNA_3082 0.53 1.2
278,871 + 11450 mRNA_3082 0.87 -0.5
278,986 - 0.6
278,990 - -0.8
279,127 - 1.3
279,146 + 0.8
279,147 + -0.3
279,149 + 2.1
279,160 + -1.7
279,335 + 2.0
279,423 + -0.7
279,427 + 0.7
279,433 - 1.0
279,447 - -1.1
279,452 + 1.8
279,458 + 0.1
279,482 + 1.5
279,566 - -0.2
279,570 + -1.0
279,573 + 0.7
279,577 + 0.4
279,579 - 0.1
279,596 - 0.1
279,600 + 0.2
279,611 + -0.3
279,629 + 0.0
279,696 + 0.3
279,703 + 0.6
279,735 + 0.5
279,741 + 0.0
279,749 - 0.0
279,754 - 1.1
279,756 - 1.2
279,768 - 0.2
279,786 - 0.8
279,837 + -0.2
279,847 - 1.2
279,853 - 0.4
279,870 - 0.6
279,874 - 1.5
279,874 - 1.4
279,877 + 0.4
279,881 - -0.5
279,892 + -0.7
279,894 + 1.3
279,896 - -0.4
279,904 + -0.3