Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3081

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278441 to 278932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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273,830 + 11448 mRNA_3080 0.83 -0.3
273,833 + 11448 mRNA_3080 0.83 0.1
273,934 + 11448 mRNA_3080 0.90 0.0
274,113 + -0.7
274,113 + 0.3
274,122 + -0.4
274,246 + 1.0
274,257 + 1.9
274,259 + 0.3
274,259 - 0.9
274,267 + 0.0
274,272 + 1.2
274,273 + 0.6
274,284 + 1.2
274,285 - 1.7
274,285 - 1.4
274,286 - 1.9
274,295 + 0.7
274,295 + 0.2
274,296 - 0.3
274,301 + 0.8
274,332 + -0.4
274,356 - 0.1
274,357 + -0.3
274,357 + 1.0
274,393 - 0.3
274,393 - 0.1
274,413 + -0.3
274,417 + -0.8
274,421 - -0.5
274,433 - 2.7
274,437 + -0.0
274,452 + 2.6
274,452 - 0.6
274,536 + 0.7
274,542 - 1.1
274,545 + 2.3
274,568 - 1.0
274,587 + 0.1
274,695 + -0.1
274,697 + 1.4
274,807 + 1.1
274,815 - 2.1
274,827 - 0.2
274,836 - -0.1
274,867 - 0.3
274,952 - 0.2
274,983 - 0.3
275,000 + 0.0
275,119 + 11449 mRNA_3081 0.10 -0.0
275,119 + 11449 mRNA_3081 0.10 1.1
275,172 + 11449 mRNA_3081 0.12 -1.5
275,263 + 11449 mRNA_3081 0.15 1.1
275,329 + 11449 mRNA_3081 0.17 -0.9
275,479 + 11449 mRNA_3081 0.21 -0.4
275,557 - 11449 mRNA_3081 0.24 1.2
275,587 + 11449 mRNA_3081 0.25 0.3
275,610 + 11449 mRNA_3081 0.25 0.6
275,734 - 11449 mRNA_3081 0.29 -0.1
275,884 + 11449 mRNA_3081 0.34 0.8
275,887 + 11449 mRNA_3081 0.34 -0.6
276,035 + 11449 mRNA_3081 0.38 1.8
276,143 - 11449 mRNA_3081 0.42 0.3
276,173 + 11449 mRNA_3081 0.43 1.8
276,207 + 11449 mRNA_3081 0.44 -0.3
276,213 - 11449 mRNA_3081 0.44 -0.6
276,311 - 11449 mRNA_3081 0.47 0.1
276,492 + 11449 mRNA_3081 0.52 2.3
276,495 - 11449 mRNA_3081 0.52 0.5
276,592 + 11449 mRNA_3081 0.55 0.2
276,619 - 11449 mRNA_3081 0.56 -0.1
276,621 - 11449 mRNA_3081 0.56 0.3
276,622 - 11449 mRNA_3081 0.56 2.2
276,651 + 11449 mRNA_3081 0.57 0.8
276,751 - 11449 mRNA_3081 0.60 0.5
276,764 - 11449 mRNA_3081 0.61 -1.9
276,771 - 11449 mRNA_3081 0.61 1.2
276,777 + 11449 mRNA_3081 0.61 -0.4
276,790 + 11449 mRNA_3081 0.61 0.2
276,815 + 11449 mRNA_3081 0.62 -0.6
277,210 + 11449 mRNA_3081 0.74 -0.0
277,221 - 11449 mRNA_3081 0.75 0.9
277,232 - 11449 mRNA_3081 0.75 0.8
277,241 - 11449 mRNA_3081 0.75 0.2
277,595 + 11449 mRNA_3081 0.86 1.4
277,644 + 11449 mRNA_3081 0.87 0.5
277,673 + 11449 mRNA_3081 0.88 0.1
277,681 - 11449 mRNA_3081 0.89 1.7
277,797 + 1.2
277,797 - -0.2
277,824 + 0.3
277,835 - 1.1
277,836 + -1.5
277,842 + -0.3
277,933 - 2.2
277,960 - -1.2
277,981 + 1.8
277,985 + 0.9
278,083 - 0.3
278,105 - 2.3
278,108 + 1.3
278,135 - 1.0
278,138 + 1.2
278,246 - -0.5
278,263 - -0.4
278,264 - 0.9
278,293 + -1.3
278,402 + -0.1
278,557 - 11450 mRNA_3082 0.24 1.2
278,558 - 11450 mRNA_3082 0.24 -1.3
278,565 + 11450 mRNA_3082 0.25 0.1
278,568 - 11450 mRNA_3082 0.26 1.7
278,704 + 11450 mRNA_3082 0.53 1.2
278,871 + 11450 mRNA_3082 0.87 -0.5
278,986 - 0.6
278,990 - -0.8