Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3080

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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271,602 - 11447 mRNA_3079 0.50 0.4
271,625 + 11447 mRNA_3079 0.52 -1.2
271,650 - 11447 mRNA_3079 0.54 -0.9
271,669 - 11447 mRNA_3079 0.55 1.4
271,710 - 11447 mRNA_3079 0.58 0.0
271,710 - 11447 mRNA_3079 0.58 -0.3
271,757 - 11447 mRNA_3079 0.61 0.3
271,906 + 11447 mRNA_3079 0.72 1.2
271,953 + 11447 mRNA_3079 0.76 1.1
272,120 - 11447 mRNA_3079 0.88 1.5
272,174 + 1.2
272,189 + -0.1
272,331 + -0.7
272,339 + 1.3
272,466 - 0.0
272,493 - 3.0
272,581 + -0.9
272,620 - 1.8
272,903 - 11448 mRNA_3080 0.22 1.9
273,232 - 11448 mRNA_3080 0.44 0.1
273,328 - 11448 mRNA_3080 0.50 0.6
273,384 - 11448 mRNA_3080 0.54 1.6
273,503 - 11448 mRNA_3080 0.62 -0.2
273,513 + 11448 mRNA_3080 0.62 1.1
273,519 - 11448 mRNA_3080 0.63 3.4
273,830 + 11448 mRNA_3080 0.83 -0.3
273,833 + 11448 mRNA_3080 0.83 0.1
273,934 + 11448 mRNA_3080 0.90 0.0
274,113 + -0.7
274,113 + 0.3
274,122 + -0.4
274,246 + 1.0
274,257 + 1.9
274,259 + 0.3
274,259 - 0.9
274,267 + 0.0
274,272 + 1.2
274,273 + 0.6
274,284 + 1.2
274,285 - 1.7
274,285 - 1.4
274,286 - 1.9
274,295 + 0.7
274,295 + 0.2
274,296 - 0.3
274,301 + 0.8
274,332 + -0.4
274,356 - 0.1
274,357 + -0.3
274,357 + 1.0
274,393 - 0.3
274,393 - 0.1
274,413 + -0.3
274,417 + -0.8
274,421 - -0.5
274,433 - 2.7
274,437 + -0.0
274,452 + 2.6
274,452 - 0.6
274,536 + 0.7
274,542 - 1.1
274,545 + 2.3
274,568 - 1.0
274,587 + 0.1
274,695 + -0.1
274,697 + 1.4
274,807 + 1.1
274,815 - 2.1
274,827 - 0.2
274,836 - -0.1
274,867 - 0.3
274,952 - 0.2
274,983 - 0.3
275,000 + 0.0