Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3077

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3076: 11444 - KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats, at 261811 to 264179 11444 mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264209 to 265729 11445 mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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263,261 - 11444 mRNA_3076 0.61 0.8
263,337 + 11444 mRNA_3076 0.64 1.5
263,497 + 11444 mRNA_3076 0.71 -0.2
263,640 - 11444 mRNA_3076 0.77 0.6
263,682 - 11444 mRNA_3076 0.79 2.9
263,685 + 11444 mRNA_3076 0.79 -0.8
263,846 - 11444 mRNA_3076 0.86 0.6
264,076 - 0.8
264,076 - 0.7
264,110 + 1.3
264,131 + 0.7
264,256 + 2.1
264,278 + 0.2
264,278 + -1.4
264,282 + -1.5
264,369 - 11445 mRNA_3077 0.11 -0.3
264,402 + 11445 mRNA_3077 0.13 -0.6
264,706 - 11445 mRNA_3077 0.33 -0.3
264,758 - 11445 mRNA_3077 0.36 1.3
264,817 - 11445 mRNA_3077 0.40 1.0
264,867 - 11445 mRNA_3077 0.43 -2.2
264,868 + 11445 mRNA_3077 0.43 -0.6
264,880 + 11445 mRNA_3077 0.44 0.9
264,914 - 11445 mRNA_3077 0.46 0.1
265,060 - 11445 mRNA_3077 0.56 1.2
265,094 + 11445 mRNA_3077 0.58 -0.4
265,114 + 11445 mRNA_3077 0.60 0.4
265,122 + 11445 mRNA_3077 0.60 -1.2
265,137 - 11445 mRNA_3077 0.61 0.8
265,148 - 11445 mRNA_3077 0.62 1.1
265,153 + 11445 mRNA_3077 0.62 1.4
265,160 - 11445 mRNA_3077 0.63 -0.3
265,180 - 11445 mRNA_3077 0.64 1.5
265,258 + 11445 mRNA_3077 0.69 1.1
265,296 + 11445 mRNA_3077 0.71 0.0
265,340 - 11445 mRNA_3077 0.74 -0.4
265,415 - 11445 mRNA_3077 0.79 0.7
265,426 - 11445 mRNA_3077 0.80 0.7
265,433 - 11445 mRNA_3077 0.80 -1.1
265,437 - 11445 mRNA_3077 0.81 -0.6
265,437 - 11445 mRNA_3077 0.81 0.0
265,447 + 11445 mRNA_3077 0.81 0.7
265,545 - 11445 mRNA_3077 0.88 2.4
265,602 + -0.8
265,605 + -1.0
265,611 + 0.2
265,625 - 0.6
265,724 + 0.8
265,731 - 0.2
265,738 - -0.1
265,740 - 1.4
265,748 - 0.2
265,758 - -0.0
265,890 - 3.1
265,905 + 0.2
265,915 - -0.5
266,184 + 0.8
266,494 - 11446 mRNA_3078 0.13 1.6
266,538 + 11446 mRNA_3078 0.14 -1.0
266,610 + 11446 mRNA_3078 0.15 1.0
266,642 - 11446 mRNA_3078 0.16 0.4