Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3065

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3064: 11432 - K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1, at 229860 to 230752 11432 mRNA_3065: 11433 - Hypothetical Protein, at 230805 to 232101 11433 mRNA_3066: 11434 - K13449 PR1 pathogenesis-related protein 1, at 232396 to 233465 11434

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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229,829 - 0.2
229,909 - 0.2
229,958 + 11432 mRNA_3064 0.11 0.1
229,985 - 11432 mRNA_3064 0.14 1.6
229,999 - 11432 mRNA_3064 0.16 0.4
230,450 + 11432 mRNA_3064 0.66 0.5
230,730 - 0.8
230,789 - -0.5
230,883 + 0.7
230,892 + 1.0
231,040 - 11433 mRNA_3065 0.18 -0.1
231,169 - 11433 mRNA_3065 0.28 -0.4
231,324 + 11433 mRNA_3065 0.40 -0.9
231,459 - 11433 mRNA_3065 0.50 0.6
231,461 - 11433 mRNA_3065 0.51 1.3
231,465 - 11433 mRNA_3065 0.51 0.3
231,467 + 11433 mRNA_3065 0.51 0.3
231,468 + 11433 mRNA_3065 0.51 1.7
231,489 + 11433 mRNA_3065 0.53 -2.0
231,592 + 11433 mRNA_3065 0.61 1.8
231,632 + 11433 mRNA_3065 0.64 1.2
231,752 + 11433 mRNA_3065 0.73 0.3
231,758 + 11433 mRNA_3065 0.73 1.3
231,764 + 11433 mRNA_3065 0.74 0.7
231,771 + 11433 mRNA_3065 0.74 0.5
231,778 - 11433 mRNA_3065 0.75 -0.1
231,780 - 11433 mRNA_3065 0.75 1.1
231,783 + 11433 mRNA_3065 0.75 -1.2
231,911 - 11433 mRNA_3065 0.85 -0.1
231,924 + 11433 mRNA_3065 0.86 -1.1
231,927 + 11433 mRNA_3065 0.87 1.3
231,948 + 11433 mRNA_3065 0.88 0.1
232,071 - 1.2
232,072 - 0.1
232,086 + -0.2
232,178 - 0.1
232,205 - 0.9
232,227 - 2.3
232,384 - 2.8
232,516 - 11434 mRNA_3066 0.11 0.9
232,656 + 11434 mRNA_3066 0.24 0.5
232,659 - 11434 mRNA_3066 0.25 0.1
232,951 - 11434 mRNA_3066 0.52 0.0
232,952 - 11434 mRNA_3066 0.52 -1.2