Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3003

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49376 to 50038 11370 mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50625 to 53414 11371 mRNA_3004: 11372 - K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5, at 53581 to 54123 11372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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49,693 - 11370 mRNA_3002 0.48 1.0
49,694 + 11370 mRNA_3002 0.48 0.3
49,833 - 11370 mRNA_3002 0.69 0.5
49,942 + 11370 mRNA_3002 0.85 -1.2
49,948 + 11370 mRNA_3002 0.86 1.6
49,951 + 11370 mRNA_3002 0.87 0.8
49,985 - 0.4
49,992 + 0.7
50,269 - 1.0
50,276 - 0.5
50,569 - -0.2
50,611 - -0.4
50,612 - 0.1
50,612 - 1.6
50,612 - -0.5
50,612 - -0.3
50,640 + 0.4
50,723 + 0.9
50,773 + 0.3
50,931 + 11371 mRNA_3003 0.11 -1.9
51,018 - 11371 mRNA_3003 0.14 0.5
51,026 + 11371 mRNA_3003 0.14 0.1
51,362 - 11371 mRNA_3003 0.26 2.1
51,655 + 11371 mRNA_3003 0.37 1.0
51,734 + 11371 mRNA_3003 0.40 -0.4
51,737 - 11371 mRNA_3003 0.40 -1.5
51,776 + 11371 mRNA_3003 0.41 1.4
51,791 + 11371 mRNA_3003 0.42 1.5
51,890 + 11371 mRNA_3003 0.45 -0.0
52,028 - 11371 mRNA_3003 0.50 0.0
52,176 - 11371 mRNA_3003 0.56 2.2
52,258 - 11371 mRNA_3003 0.59 0.1
52,299 - 11371 mRNA_3003 0.60 -0.8
52,427 - 11371 mRNA_3003 0.65 0.7
52,489 + 11371 mRNA_3003 0.67 0.3
52,506 - 11371 mRNA_3003 0.67 0.4
52,515 - 11371 mRNA_3003 0.68 0.2
52,743 + 11371 mRNA_3003 0.76 1.1
53,186 - -1.1
53,353 - 0.6
53,484 - 2.6
53,585 - 0.1
54,193 - 1.5
54,311 + 0.3
54,369 - -0.5