Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2995

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30118 to 34295 11362 mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34550 to 37704 11363 mRNA_2996: 11364 - Hypothetical Protein, at 37820 to 39043 11364

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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33,554 + 11362 mRNA_2994 0.82 1.8
33,814 + 11362 mRNA_2994 0.88 2.4
33,902 - 0.6
34,049 - 1.2
34,167 - -0.2
34,189 + -1.1
34,208 + -1.1
34,212 - -0.5
34,217 + -0.1
34,220 + 1.1
34,352 + -0.3
34,355 - 0.2
34,358 + 2.4
34,364 - 1.1
34,371 - 0.6
34,377 + -0.7
34,384 + -0.0
34,387 - -0.1
34,402 + 0.4
34,408 - -1.0
34,421 + 3.1
34,431 + 0.7
34,648 + 0.8
34,697 + 0.8
34,697 + -0.8
35,117 - 11363 mRNA_2995 0.18 0.5
35,245 - 11363 mRNA_2995 0.22 0.6
35,247 - 11363 mRNA_2995 0.22 -0.3
35,579 - 11363 mRNA_2995 0.33 0.3
35,693 - 11363 mRNA_2995 0.36 -0.1
35,751 - 11363 mRNA_2995 0.38 0.1
36,003 + 11363 mRNA_2995 0.46 -0.3
36,165 + 11363 mRNA_2995 0.51 -0.4
36,261 + 11363 mRNA_2995 0.54 -0.4
36,278 - 11363 mRNA_2995 0.55 -0.2
36,410 - 11363 mRNA_2995 0.59 0.1
36,440 - 11363 mRNA_2995 0.60 0.3
36,612 - 11363 mRNA_2995 0.65 -0.3
36,682 + 11363 mRNA_2995 0.68 0.1
36,683 - 11363 mRNA_2995 0.68 0.4
36,808 + 11363 mRNA_2995 0.72 0.5
36,821 + 11363 mRNA_2995 0.72 -0.9
36,821 + 11363 mRNA_2995 0.72 0.1
36,825 - 11363 mRNA_2995 0.72 0.1
36,856 - 11363 mRNA_2995 0.73 1.7
37,048 - 11363 mRNA_2995 0.79 -0.3
37,381 + 11363 mRNA_2995 0.90 0.8
37,649 + 0.0
37,733 - -1.8
37,778 - 0.1