Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2993

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29624 to 29993 11361 mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30118 to 34295 11362

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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28,633 - -0.7
28,729 - 1.0
28,820 + 1.5
28,820 + 0.8
28,895 - 0.5
28,907 - 1.2
28,952 + 0.9
28,952 + -1.0
28,981 - 0.4
29,069 + -1.0
29,212 + 2.0
29,317 + 0.1
29,361 - 1.3
29,390 - 1.4
29,393 + -0.9
29,449 + 1.6
29,479 - 1.4
29,490 + 1.7
29,556 - 1.2
29,690 - 11361 mRNA_2993 0.18 0.9
29,693 - 11361 mRNA_2993 0.19 1.8
29,694 - 11361 mRNA_2993 0.19 0.3
29,802 + 11361 mRNA_2993 0.48 -1.0
29,967 + 0.4
29,999 + -0.5
30,170 - 0.3
30,250 + -0.0
30,385 + -0.2
30,462 + 0.9
30,476 - 1.7
30,478 + 1.5
30,491 + 3.3
30,494 - 1.1
30,499 - -1.2
30,625 - 11362 mRNA_2994 0.12 0.5
30,712 + 11362 mRNA_2994 0.14 2.3
30,839 + 11362 mRNA_2994 0.17 1.1
30,858 + 11362 mRNA_2994 0.18 1.6
30,956 - 11362 mRNA_2994 0.20 0.5