Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2990

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19979 to 21478 11357 mRNA_2990: 11358 - SUPERFAMILY--SSF52047, at 21801 to 25370 11358 mRNA_2991: 11359 - SUPERFAMILY--SSF50685, at 25748 to 27268 11359

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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20,859 - 11357 mRNA_2989 0.59 0.2
20,903 + 11357 mRNA_2989 0.62 -0.5
20,914 + 11357 mRNA_2989 0.62 0.1
21,059 - 11357 mRNA_2989 0.72 -1.2
21,110 + 11357 mRNA_2989 0.75 -0.2
21,159 + 11357 mRNA_2989 0.79 -0.5
21,205 - 11357 mRNA_2989 0.82 0.8
21,205 + 11357 mRNA_2989 0.82 0.8
21,224 + 11357 mRNA_2989 0.83 1.9
21,352 - 2.2
21,399 + 1.3
21,484 + -0.2
21,595 - -1.3
21,605 + -0.3
21,679 + -0.3
21,756 - 0.7
22,179 + 11358 mRNA_2990 0.11 0.7
22,659 - 11358 mRNA_2990 0.24 2.3
22,668 + 11358 mRNA_2990 0.24 0.0
23,235 - 11358 mRNA_2990 0.40 -1.9
24,298 - 11358 mRNA_2990 0.70 -0.8
24,705 + 11358 mRNA_2990 0.81 -0.9
25,089 + -1.8
25,386 - 1.6
25,389 - -0.6
25,415 - 0.2
25,430 + 2.2
25,430 + 0.8
25,547 - 1.0
25,560 - 0.1
25,564 - 1.5
25,565 + 0.9
25,569 - -0.8
25,582 + -0.5
25,587 - 2.0
25,588 + 0.9
25,889 - 0.7
26,023 + 11359 mRNA_2991 0.18 -0.0
26,023 + 11359 mRNA_2991 0.18 0.7
26,148 - 11359 mRNA_2991 0.26 0.7
26,279 - 11359 mRNA_2991 0.35 0.3
26,297 + 11359 mRNA_2991 0.36 -0.7