Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2989

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2988: 11356 - KOG1212 Amidases, at 17852 to 19907 11356 mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19979 to 21478 11357 mRNA_2990: 11358 - SUPERFAMILY--SSF52047, at 21801 to 25370 11358

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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19,124 - 11356 mRNA_2988 0.62 -0.7
19,317 + 11356 mRNA_2988 0.71 0.8
19,338 + 11356 mRNA_2988 0.72 0.6
19,420 + 11356 mRNA_2988 0.76 -0.4
19,423 + 11356 mRNA_2988 0.76 2.0
19,574 - 11356 mRNA_2988 0.84 -0.9
19,612 + 11356 mRNA_2988 0.86 0.2
19,621 + 11356 mRNA_2988 0.86 2.7
19,747 + -0.3
19,778 - 1.4
19,780 + 0.5
19,860 - 1.1
19,900 + 2.3
19,924 + -0.8
19,981 - 1.4
20,043 + 0.5
20,073 + 0.2
20,187 - 11357 mRNA_2989 0.14 0.9
20,491 - 11357 mRNA_2989 0.34 0.3
20,755 - 11357 mRNA_2989 0.52 0.3
20,760 + 11357 mRNA_2989 0.52 -0.1
20,777 - 11357 mRNA_2989 0.53 -0.1
20,859 - 11357 mRNA_2989 0.59 0.2
20,903 + 11357 mRNA_2989 0.62 -0.5
20,914 + 11357 mRNA_2989 0.62 0.1
21,059 - 11357 mRNA_2989 0.72 -1.2
21,110 + 11357 mRNA_2989 0.75 -0.2
21,159 + 11357 mRNA_2989 0.79 -0.5
21,205 - 11357 mRNA_2989 0.82 0.8
21,205 + 11357 mRNA_2989 0.82 0.8
21,224 + 11357 mRNA_2989 0.83 1.9
21,352 - 2.2
21,399 + 1.3
21,484 + -0.2
21,595 - -1.3
21,605 + -0.3
21,679 + -0.3
21,756 - 0.7
22,179 + 11358 mRNA_2990 0.11 0.7