Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2980

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2980: 11348 - KOG3140 Predicted membrane protein, at 23 to 1444 11348

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1 + 0.5
1 + 0.5
1 + 1.6
21 + 2.2
21 + 0.5
21 + -0.1
41 + 1.3
42 + -0.0
44 + 0.5
79 - 3.6
79 + 0.0
149 - 0.5
264 + 11348 mRNA_2980 0.17 0.2
266 - 11348 mRNA_2980 0.17 1.0
338 - 11348 mRNA_2980 0.22 0.0
341 + 11348 mRNA_2980 0.22 0.9
454 - 11348 mRNA_2980 0.30 -0.5
484 - 11348 mRNA_2980 0.32 0.6
489 - 11348 mRNA_2980 0.33 -2.5
491 + 11348 mRNA_2980 0.33 0.1
507 + 11348 mRNA_2980 0.34 1.7
510 + 11348 mRNA_2980 0.34 0.7
516 - 11348 mRNA_2980 0.35 4.2
654 + 11348 mRNA_2980 0.44 0.4
719 + 11348 mRNA_2980 0.49 2.8
1,007 + 11348 mRNA_2980 0.69 0.6
1,048 - 11348 mRNA_2980 0.72 3.5
1,218 - 11348 mRNA_2980 0.84 0.6
1,248 + 11348 mRNA_2980 0.86 3.2
1,364 + 2.6
1,374 - 0.1
1,401 + 0.3
1,452 + 1.2
1,488 - 0.0
1,503 + 0.6
1,513 + 1.3
1,515 - 0.4
1,551 + 0.3
1,634 + 0.9
1,635 + 0.2
1,657 + 0.4
1,668 + 1.1
1,805 - 0.8
1,805 + -0.1
1,818 + 0.6
1,882 + 0.6
1,934 + 1.6
1,948 + 1.0
1,949 - 0.1
1,974 + 0.1
1,992 + 0.6
1,992 + -1.0
1,993 + 0.2
2,011 + -0.0
2,082 + 0.1
2,084 - -1.1
2,086 + -1.3
2,086 + 1.3
2,086 + 1.0
2,095 + -0.2
2,097 - 0.3
2,098 + 1.3
2,115 + 0.9
2,117 + -0.5
2,120 + -0.8
2,121 - 0.3
2,121 - 1.5
2,125 - 1.4
2,126 + 0.5
2,131 + -0.9
2,131 + 0.3
2,131 + 0.2
2,133 + -0.3
2,243 + 3.7
2,265 + 0.8
2,301 + 2.3
2,320 + 1.0
2,324 - 0.3
2,357 + 0.2