Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2976

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693422 to 694637 11343 mRNA_2976: 11344 - KOG2592 Tumor differentially expressed (TDE) protein, at 694917 to 696801 11344 mRNA_2977: 11345 - K05758 ARPC2 actin related protein 2/3 complex, subunit 2, at 697458 to 698969 11345

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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694,167 + 11343 mRNA_2975 0.61 0.1
694,224 + 11343 mRNA_2975 0.66 1.7
694,469 - 11343 mRNA_2975 0.86 0.4
694,567 + 1.8
694,615 - 0.6
694,735 + 2.4
694,738 + 0.2
694,813 - -0.3
695,016 - 2.7
695,025 + 0.8
695,041 - 1.0
695,097 + 1.3
695,607 - 11344 mRNA_2976 0.37 0.6
695,618 - 11344 mRNA_2976 0.37 2.8
695,743 - 11344 mRNA_2976 0.44 0.1
695,780 + 11344 mRNA_2976 0.46 1.0
695,826 - 11344 mRNA_2976 0.48 0.5
695,931 + 11344 mRNA_2976 0.54 -2.3
695,935 - 11344 mRNA_2976 0.54 1.3
695,950 + 11344 mRNA_2976 0.55 0.5
696,043 - 11344 mRNA_2976 0.60 0.4
696,957 - -1.5
697,009 - -1.0
697,245 - -0.1
697,251 + -2.4
697,255 - 1.2
697,258 + 0.7
697,259 - 3.1
697,261 + 2.8
697,267 + 0.3