Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2907

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2906: 11274 - K02960 RP-S16e, RPS16 small subunit ribosomal protein S16e, at 508633 to 509349 11274 mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510278 to 512745 11275 mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512850 to 515031 11276

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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509,860 - 1.2
509,883 + -0.7
509,890 + -1.8
509,890 + -0.2
509,893 - 0.8
509,905 + -1.1
509,906 - 2.8
510,070 + 1.3
510,133 + -2.2
510,141 - -0.2
510,141 - -0.8
510,144 + 0.2
510,151 + -0.4
510,157 + 1.7
510,172 + -0.8
510,188 - 0.5
510,194 - -1.1
510,204 - 1.0
510,210 + 0.6
510,223 + -0.1
510,240 + -0.1
510,319 - -0.7
510,334 + -0.8
510,342 + 0.5
510,383 - 3.7
510,395 + 0.5
510,497 - -3.3
511,249 - 11275 mRNA_2907 0.39 0.7
511,360 - 11275 mRNA_2907 0.44 0.8
511,686 - 11275 mRNA_2907 0.57 -0.3
511,708 - 11275 mRNA_2907 0.58 -1.3
511,795 + 11275 mRNA_2907 0.61 -0.5
512,080 - 11275 mRNA_2907 0.73 -0.1
512,083 + 11275 mRNA_2907 0.73 0.6
512,122 + 11275 mRNA_2907 0.75 -0.4
512,243 - 11275 mRNA_2907 0.80 -1.1
512,542 - -2.8
512,692 + 0.2
512,702 - 0.8
512,941 + -1.3
513,269 - 11276 mRNA_2908 0.19 -2.2
513,336 - 11276 mRNA_2908 0.22 -0.3
513,362 - 11276 mRNA_2908 0.23 4.2
513,382 + 11276 mRNA_2908 0.24 0.3
513,497 + 11276 mRNA_2908 0.30 0.9
513,531 + 11276 mRNA_2908 0.31 0.9
513,569 + 11276 mRNA_2908 0.33 -0.7
513,571 - 11276 mRNA_2908 0.33 0.2
513,601 - 11276 mRNA_2908 0.34 1.5
513,617 - 11276 mRNA_2908 0.35 0.1
513,617 - 11276 mRNA_2908 0.35 0.7
513,624 + 11276 mRNA_2908 0.35 -0.1
513,629 - 11276 mRNA_2908 0.36 0.1
513,631 + 11276 mRNA_2908 0.36 1.0
513,640 + 11276 mRNA_2908 0.36 -0.2
513,643 - 11276 mRNA_2908 0.36 0.2
513,680 + 11276 mRNA_2908 0.38 -0.2
513,683 - 11276 mRNA_2908 0.38 -1.3