Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2901

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493675 to 494245 11268 mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494917 to 497480 11269 mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498164 to 500409 11270

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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494,113 + 11268 mRNA_2900 0.77 -1.2
494,367 + 0.3
494,433 + 0.5
494,489 + 1.6
494,513 + -0.2
494,547 + 0.1
494,604 - -0.4
494,604 - 0.7
494,635 - 1.0
494,646 + 0.1
494,651 + 0.2
494,655 + -1.5
494,655 - 0.9
494,656 + -0.0
494,684 + 0.4
494,684 - 0.7
494,687 - -0.8
494,692 - 0.8
494,699 - 0.5
494,700 - 0.1
494,701 + -1.1
494,717 + -0.8
494,722 - 1.4
494,816 + 0.6
494,818 - 1.3
494,837 - 0.3
494,851 - 0.1
494,861 + -0.3
494,874 + -1.2
494,927 - 0.6
494,988 - 0.5
495,011 - -0.4
495,016 - 0.7
495,052 + -0.5
495,129 - 0.7
495,162 - -0.6
495,276 + 11269 mRNA_2901 0.14 1.8
495,336 + 11269 mRNA_2901 0.16 0.7
495,578 - 11269 mRNA_2901 0.26 -0.0
495,745 + 11269 mRNA_2901 0.32 -0.5
495,778 - 11269 mRNA_2901 0.34 1.1
496,459 - 11269 mRNA_2901 0.60 -3.0
496,502 - 11269 mRNA_2901 0.62 1.6
496,591 + 11269 mRNA_2901 0.65 -0.1
496,602 - 11269 mRNA_2901 0.66 0.3
496,713 - 11269 mRNA_2901 0.70 2.1
496,727 + 11269 mRNA_2901 0.71 -0.1
496,786 - 11269 mRNA_2901 0.73 -0.5
497,060 + 11269 mRNA_2901 0.84 1.2
497,175 - 11269 mRNA_2901 0.88 1.6
497,180 + 11269 mRNA_2901 0.88 1.6
497,457 - 0.9
497,725 + -0.5
497,886 + -0.7
497,917 + 1.7
497,935 + 0.3
497,999 - -0.5
498,064 - 1.3
498,101 - 0.6
498,191 - 0.4
498,232 - -0.8