Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2889

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461121 to 465686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466050 to 468099 11257 mRNA_2890: 11258 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 468371 to 468835 11258

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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465,112 - 11256 mRNA_2888 0.87 1.5
465,119 + 11256 mRNA_2888 0.88 0.2
465,129 + 11256 mRNA_2888 0.88 1.0
465,154 - 11256 mRNA_2888 0.88 0.0
465,289 + 0.0
465,571 + -1.2
465,846 - 0.1
465,865 + 0.0
465,933 - -0.4
465,968 - 2.4
465,973 + 0.8
465,982 + 2.0
465,983 - 0.7
465,991 + 0.5
466,133 - -0.1
466,153 - 0.3
466,193 + 0.3
466,270 - 11257 mRNA_2889 0.11 0.1
466,271 - 11257 mRNA_2889 0.11 -0.8
466,284 + 11257 mRNA_2889 0.11 0.7
466,706 + 11257 mRNA_2889 0.32 0.9
466,855 + 11257 mRNA_2889 0.39 1.1
467,157 - 11257 mRNA_2889 0.54 1.0
467,667 - 11257 mRNA_2889 0.79 0.3
467,987 - 0.4
468,062 + 2.6
468,202 - 0.6
468,317 - -1.1
468,350 + -0.3
468,589 + 11258 mRNA_2890 0.47 0.9
468,825 + -1.1