Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2888

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2887: 11255 - K07442 TRM61, GCD14 tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit, at 458953 to 460669 11255 mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461121 to 465686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466050 to 468099 11257

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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460,666 + -1.1
460,673 - 1.1
460,845 - -3.5
460,875 - 0.3
460,939 - 1.2
460,958 - 1.5
460,973 - -0.3
460,975 + 0.1
460,985 - -0.0
460,985 + 0.2
460,998 - 1.1
461,000 + -0.1
461,005 + -0.7
461,019 - 0.1
461,102 - 1.5
461,131 + 0.2
461,131 + 0.7
461,139 - 0.2
461,173 + -1.3
461,231 - 1.1
461,277 - -0.1
461,289 - 1.5
461,318 - 1.8
461,326 + -0.2
461,384 + 1.3
461,411 - 1.9
461,449 - 0.1
461,475 - -0.7
461,595 + 11256 mRNA_2888 0.10 1.7
461,720 + 11256 mRNA_2888 0.13 2.5
461,847 + 11256 mRNA_2888 0.16 -1.1
461,986 - 11256 mRNA_2888 0.19 0.7
462,151 + 11256 mRNA_2888 0.23 1.6
462,306 - 11256 mRNA_2888 0.26 3.0
462,318 + 11256 mRNA_2888 0.26 1.9
462,367 - 11256 mRNA_2888 0.27 0.7
462,563 - 11256 mRNA_2888 0.32 -0.4
462,682 + 11256 mRNA_2888 0.34 -0.4
462,883 - 11256 mRNA_2888 0.39 0.0
462,940 + 11256 mRNA_2888 0.40 0.4
463,043 + 11256 mRNA_2888 0.42 0.1
463,233 - 11256 mRNA_2888 0.46 0.7
463,331 + 11256 mRNA_2888 0.48 1.3
463,377 + 11256 mRNA_2888 0.49 0.8
463,379 - 11256 mRNA_2888 0.49 1.7
463,419 + 11256 mRNA_2888 0.50 -1.8
463,482 + 11256 mRNA_2888 0.52 -0.1
463,636 + 11256 mRNA_2888 0.55 0.7
464,057 - 11256 mRNA_2888 0.64 -0.4
464,215 - 11256 mRNA_2888 0.68 0.5
464,239 - 11256 mRNA_2888 0.68 -0.5
464,372 - 11256 mRNA_2888 0.71 -0.6
464,373 - 11256 mRNA_2888 0.71 0.0
464,408 + 11256 mRNA_2888 0.72 0.9
464,524 + 11256 mRNA_2888 0.75 0.5
464,598 - 11256 mRNA_2888 0.76 0.5
464,624 + 11256 mRNA_2888 0.77 -0.1
464,625 - 11256 mRNA_2888 0.77 0.4
464,780 - 11256 mRNA_2888 0.80 -1.3
464,955 + 11256 mRNA_2888 0.84 0.9
464,982 - 11256 mRNA_2888 0.85 0.4
465,112 - 11256 mRNA_2888 0.87 1.5
465,119 + 11256 mRNA_2888 0.88 0.2
465,129 + 11256 mRNA_2888 0.88 1.0
465,154 - 11256 mRNA_2888 0.88 0.0
465,289 + 0.0
465,571 + -1.2
465,846 - 0.1
465,865 + 0.0
465,933 - -0.4
465,968 - 2.4
465,973 + 0.8
465,982 + 2.0
465,983 - 0.7
465,991 + 0.5
466,133 - -0.1
466,153 - 0.3
466,193 + 0.3
466,270 - 11257 mRNA_2889 0.11 0.1
466,271 - 11257 mRNA_2889 0.11 -0.8
466,284 + 11257 mRNA_2889 0.11 0.7