Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2879

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431152 to 434004 11246 mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434192 to 435080 11247

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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433,200 - 11246 mRNA_2878 0.72 1.6
433,300 + 11246 mRNA_2878 0.75 1.3
433,340 - 11246 mRNA_2878 0.77 0.8
433,444 - 11246 mRNA_2878 0.80 -0.3
433,619 + 11246 mRNA_2878 0.86 1.3
433,619 + 11246 mRNA_2878 0.86 1.6
433,768 + -0.3
433,777 + -0.4
433,879 + -0.0
433,900 - 0.3
433,909 + 0.0
433,923 - 0.3
434,033 + 0.8
434,112 - 0.1
434,119 + -1.1
434,120 + 0.6
434,120 - -1.0
434,130 - 1.3
434,243 + 0.2
434,295 - 11247 mRNA_2879 0.12 2.1
434,697 - 11247 mRNA_2879 0.57 0.3
434,890 - 11247 mRNA_2879 0.79 1.3
435,639 + 1.1
435,681 - 0.8
435,712 + 1.8
435,719 - -0.4
435,735 - 0.8
435,767 + -0.8
435,857 + -1.0
435,875 + 0.2
435,880 + -0.1
435,947 + 0.1
435,948 - 0.8
436,005 - 0.9
436,012 - -0.0
436,014 + 0.5
436,016 + 1.3
436,023 + 0.5
436,040 - 0.7
436,049 - 1.2
436,058 - 0.0
436,058 + -0.5
436,060 + -0.9
436,063 + -0.4