Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2864

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2863: 11231 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 392445 to 393702 11231 mRNA_2864: 11232 - KOG2699 Predicted ubiquitin regulatory protein, at 393832 to 395067 11232 mRNA_2865: 11233 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 395366 to 397041 11233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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393,217 + 11231 mRNA_2863 0.61 -0.0
393,220 - 11231 mRNA_2863 0.62 -1.7
393,520 + 11231 mRNA_2863 0.85 0.8
393,639 + 0.2
393,642 + -0.4
393,794 + 0.0
393,918 - -0.5
393,925 + -0.3
393,933 - 1.2
394,056 - 11232 mRNA_2864 0.18 0.3
394,057 - 11232 mRNA_2864 0.18 -0.4
394,069 + 11232 mRNA_2864 0.19 -0.2
394,751 - 11232 mRNA_2864 0.74 -1.3
394,992 - -1.2
395,051 - 1.2
395,071 + -1.6
395,224 + -0.7
395,224 + 0.0
395,511 + 1.9
395,762 - 11233 mRNA_2865 0.24 -0.9
395,826 + 11233 mRNA_2865 0.27 0.6
396,060 + 11233 mRNA_2865 0.41 2.0