Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2854

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2853: 11221 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 368272 to 370458 11221 mRNA_2854: 11222 - KOG2084 Predicted histone tail methylase containing SET domain, at 371099 to 373142 11222 mRNA_2855: 11223 - K10747 LIG1 DNA ligase 1, at 373741 to 377451 11223

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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370,191 + 11221 mRNA_2853 0.88 2.8
370,236 + 11221 mRNA_2853 0.90 -0.2
370,240 + 0.3
370,241 - 0.6
370,257 - -0.3
370,356 - 0.4
370,356 - 1.2
370,409 + 4.1
370,418 + -0.7
370,533 + 1.5
370,564 + -1.6
370,565 - 1.4
370,655 + -0.6
370,679 + 0.5
370,686 + 0.4
370,737 + -0.5
370,851 + 0.7
370,864 + 0.3
370,971 - 0.2
370,990 + -0.1
370,993 + 2.2
371,009 - -0.3
371,059 - 0.4
371,177 - 0.4
371,184 - -1.1
371,376 + 11222 mRNA_2854 0.14 2.0
371,788 + 11222 mRNA_2854 0.34 -0.7
371,902 + 11222 mRNA_2854 0.39 -1.6
371,913 + 11222 mRNA_2854 0.40 0.9
372,024 - 11222 mRNA_2854 0.45 0.4
372,308 + 11222 mRNA_2854 0.59 0.9
372,463 + 11222 mRNA_2854 0.67 0.5
372,739 - 11222 mRNA_2854 0.80 0.3
372,781 + 11222 mRNA_2854 0.82 -2.8
372,908 - 11222 mRNA_2854 0.89 -1.3
373,078 - -1.4
373,194 + -0.5
373,210 + 2.0
373,375 - 0.9
373,480 + 0.8
373,537 + 2.9
373,669 - 1.2
373,692 - -0.1
373,819 - -2.1
373,857 + 0.3