Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2840

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2839: 11207 - K01427 URE urease, at 333745 to 337824 11207 mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338126 to 339492 11208 mRNA_2841: 11209 - KOG3290 Peroxisomal phytanoyl-CoA hydroxylase, at 339851 to 340983 11209

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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337,360 + 11207 mRNA_2839 0.89 -1.2
337,391 - 11207 mRNA_2839 0.89 0.2
337,449 + 1.4
337,557 - -1.1
337,571 - 1.5
337,571 - 0.7
337,577 + 2.1
337,596 + -0.3
337,779 - -1.3
337,779 - 1.3
337,860 + -0.1
337,883 + 1.5
337,897 - -0.1
338,013 - 0.6
338,188 + -0.7
338,204 + 0.7
338,214 + 0.6
338,862 + 11208 mRNA_2840 0.54 0.8
338,928 - 11208 mRNA_2840 0.59 -0.8
339,177 - 11208 mRNA_2840 0.77 -0.4
339,197 - 11208 mRNA_2840 0.78 -0.4
339,313 + 11208 mRNA_2840 0.87 0.5
339,494 + -0.2
339,515 + 0.1
339,621 + -0.2
339,632 - -2.1
339,643 + 0.2
339,646 + 0.8
339,748 - -0.4
339,801 - 1.1
339,807 - 2.0
339,890 - 1.1
339,928 - 0.5
339,948 + -0.5
339,951 - 0.4
339,961 - -0.2
340,069 - 11209 mRNA_2841 0.19 0.5
340,086 - 11209 mRNA_2841 0.21 1.1
340,101 - 11209 mRNA_2841 0.22 -1.0
340,240 + 11209 mRNA_2841 0.34 0.9
340,396 - 11209 mRNA_2841 0.48 0.4
340,398 - 11209 mRNA_2841 0.48 -0.1