Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2803

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2802: 11170 - K11309 RTT109, KAT11 regulator of Ty1 transposition protein 109, at 251577 to 253280 11170 mRNA_2803: 11171 - K01301 NAALAD N-acetylated-alpha-linked acidic dipeptidase, at 253457 to 256700 11171 mRNA_2804: 11172 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 257436 to 258912 11172

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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252,537 - 11170 mRNA_2802 0.56 -1.1
253,355 + -1.1
253,415 + 0.5
253,416 - -0.6
253,506 + -1.1
253,527 - -0.6
253,670 - -2.7
253,680 - 1.4
253,687 + -0.7
253,690 + -1.1
253,698 + 0.0
253,701 + 0.4
254,007 + 11171 mRNA_2803 0.17 0.4
254,133 - 11171 mRNA_2803 0.21 0.2
254,165 + 11171 mRNA_2803 0.22 0.1
254,277 - 11171 mRNA_2803 0.25 -0.3
254,635 + 11171 mRNA_2803 0.36 0.8
254,711 - 11171 mRNA_2803 0.39 -1.2
254,723 - 11171 mRNA_2803 0.39 -0.3
254,727 + 11171 mRNA_2803 0.39 -1.5
254,969 + 11171 mRNA_2803 0.47 -1.0
255,132 - 11171 mRNA_2803 0.52 0.4
255,943 - 11171 mRNA_2803 0.77 1.8
256,009 - 11171 mRNA_2803 0.79 -0.2
256,027 + 11171 mRNA_2803 0.79 1.2
256,046 + 11171 mRNA_2803 0.80 1.0
256,199 + 11171 mRNA_2803 0.85 0.7
256,596 - -0.7
256,602 - -1.6
256,603 - -0.3
256,615 - -0.4
256,784 + 0.7
256,797 + -0.6
256,890 - 0.0
256,909 + 0.1
256,923 + 0.1
256,927 + -0.8
256,935 + -0.0
256,940 + 1.7
257,059 + -0.1
257,070 - 0.5
257,073 + 0.6
257,079 + 1.6
257,090 - -0.8
257,202 - 1.9
257,211 + 1.8
257,214 - 0.3
257,219 + -0.3
257,237 + 0.5
257,240 - 0.3
257,368 + 0.6