Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2780

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2780: 11148 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 194102 to 194966 11148 mRNA_2781: 11149 - K09506 DNAJA5 DnaJ homolog subfamily A member 5, at 195140 to 197521 11149

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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193,120 + 0.0
193,253 + -2.5
193,285 - 0.1
193,308 + 1.7
193,309 - 1.1
193,310 - -0.6
193,318 + -0.3
193,321 - -0.1
193,330 + -0.1
193,383 - -0.2
193,384 + -0.2
193,391 + -0.0
193,397 - -0.3
193,397 - 1.5
193,404 + -1.1
193,414 - 0.9
193,435 - 0.3
193,462 - -2.0
193,478 - -0.2
193,480 - 0.6
193,489 - -2.8
193,522 - 0.4
193,529 + 1.3
193,543 + -0.4
193,563 + -2.0
193,573 - -0.4
193,578 + 0.8
193,578 + 0.3
193,582 + -0.0
193,600 + 2.5
193,615 - 0.7
193,621 + 0.2
193,622 + -0.5
193,623 + -0.3
193,703 + 1.9
193,745 + 0.9
193,749 + -0.2
193,875 - 1.2
193,900 + -0.2
194,369 - 11148 mRNA_2780 0.31 1.0
194,482 - 11148 mRNA_2780 0.44 0.9
194,582 - 11148 mRNA_2780 0.55 1.3
194,599 + 11148 mRNA_2780 0.57 0.2
194,602 - 11148 mRNA_2780 0.58 -0.1
194,770 - 11148 mRNA_2780 0.77 0.3
194,880 + 0.7
194,919 - -0.5
194,924 - -0.1
194,925 + 0.1
194,926 + 0.0
195,071 + 0.3
195,200 - -0.7
195,228 + 1.2
195,345 + -0.4
195,661 - 11149 mRNA_2781 0.22 1.1
195,759 - 11149 mRNA_2781 0.26 1.2
195,810 + 11149 mRNA_2781 0.28 0.2
195,852 - 11149 mRNA_2781 0.30 -0.1
195,891 + 11149 mRNA_2781 0.32 0.5