Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2770

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171565 to 173167 11137 mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173510 to 175017 11138 mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175827 to 177001 11139

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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172,514 + 11137 mRNA_2769 0.59 -0.5
172,527 - 11137 mRNA_2769 0.60 1.8
172,530 + 11137 mRNA_2769 0.60 0.8
172,661 - 11137 mRNA_2769 0.68 -0.4
172,670 - 11137 mRNA_2769 0.69 0.4
172,702 + 11137 mRNA_2769 0.71 1.4
172,706 + 11137 mRNA_2769 0.71 -0.0
172,706 - 11137 mRNA_2769 0.71 1.3
172,722 - 11137 mRNA_2769 0.72 -1.0
172,723 + 11137 mRNA_2769 0.72 -1.0
172,790 - 11137 mRNA_2769 0.76 0.7
172,816 + 11137 mRNA_2769 0.78 1.3
172,817 - 11137 mRNA_2769 0.78 -0.0
172,825 - 11137 mRNA_2769 0.79 -2.0
172,827 + 11137 mRNA_2769 0.79 -0.8
172,834 - 11137 mRNA_2769 0.79 0.0
172,899 - 11137 mRNA_2769 0.83 0.7
172,921 - 11137 mRNA_2769 0.85 -1.5
172,969 - 11137 mRNA_2769 0.88 1.4
172,976 - 11137 mRNA_2769 0.88 0.4
172,978 + 11137 mRNA_2769 0.88 2.0
172,979 + 11137 mRNA_2769 0.88 2.1
173,102 - -0.6
173,198 + 1.4
173,234 - 1.8
173,570 - 0.9
174,062 - 11138 mRNA_2770 0.37 -0.2
174,127 + 11138 mRNA_2770 0.41 0.2
174,165 + 11138 mRNA_2770 0.43 1.6
174,575 - 11138 mRNA_2770 0.71 -0.1
174,576 - 11138 mRNA_2770 0.71 0.4
174,713 + 11138 mRNA_2770 0.80 0.4
174,870 + 0.3
174,885 - 2.0
175,208 + 0.3
175,595 - 0.7
175,603 + -0.5
175,613 + 0.6
175,733 - -0.6
175,760 - -1.2
175,779 + 0.8
175,795 + 1.6
175,897 - 2.0
175,898 + 1.3
175,909 - 0.2
175,948 + 11139 mRNA_2771 0.10 0.9
176,015 + 11139 mRNA_2771 0.16 2.6