Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2744

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2743: 11111 - KOG4491 Predicted membrane protein, at 119009 to 120330 11111 mRNA_2744: 11112 - K20798 HENMT1 small RNA 2'-O-methyltransferase, at 120762 to 122799 11112 mRNA_2745: 11113 - HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785, at 123749 to 127463 11113

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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119,788 - 11111 mRNA_2743 0.59 0.0
119,796 - 11111 mRNA_2743 0.60 0.0
119,796 + 11111 mRNA_2743 0.60 1.5
119,940 - 11111 mRNA_2743 0.70 -0.2
120,072 - 11111 mRNA_2743 0.80 -1.1
120,088 - 11111 mRNA_2743 0.82 -0.2
120,097 + 11111 mRNA_2743 0.82 -0.1
120,099 + 11111 mRNA_2743 0.82 -0.7
120,105 + 11111 mRNA_2743 0.83 -0.1
120,246 - 0.0
120,249 + -0.1
120,251 + 0.8
120,516 - -0.1
120,561 + -1.0
120,570 - 1.0
120,700 - 0.2
120,701 + 1.9
120,734 + 0.3
120,827 - 2.0
120,841 - 1.7
120,853 + -0.2
120,860 - 0.4
121,129 - 11112 mRNA_2744 0.18 -0.5
121,397 + 11112 mRNA_2744 0.31 0.7
121,671 + 11112 mRNA_2744 0.45 0.0
121,719 - 11112 mRNA_2744 0.47 -1.2
122,154 + 11112 mRNA_2744 0.68 0.8
122,409 + 11112 mRNA_2744 0.81 0.9
122,575 + 11112 mRNA_2744 0.89 0.2
122,576 - 11112 mRNA_2744 0.89 -2.0
122,605 + 0.9
122,753 + 0.7
122,878 - -0.0
122,988 - 1.3
122,995 + -0.4
122,996 - 0.2
123,012 + -0.3
123,013 + 0.6
123,033 + 1.9
123,038 - -0.4
123,041 + 0.2
123,051 - -0.8
123,059 - 0.5
123,060 + 0.9
123,069 + -0.0
123,069 + -1.1
123,071 - -0.2
123,073 + 0.6
123,082 + 0.3
123,105 + 0.0
123,112 - -0.8
123,122 + -0.0
123,151 + -0.5
123,166 + -0.1
123,173 - -0.3
123,173 - 0.5
123,178 + 1.1
123,188 - 0.1
123,202 + 1.0
123,210 + -0.0
123,315 - -0.2
123,394 + -0.2
123,422 - 1.7
123,442 - 0.5
123,474 + 0.2
123,487 - 0.8
123,499 + 0.4
123,502 + 2.0
123,517 + -0.3
123,518 - 1.0
123,547 + -0.6
123,548 - 0.9
123,562 + 1.5
123,573 + 0.3
123,590 - 0.6
123,605 - -0.4
123,608 - -0.8
123,672 + -0.1
123,690 + -0.5
123,725 + -0.0
123,749 + 1.7
123,750 - 1.0