Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2720

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2719: 11087 - Hypothetical Protein, at 74043 to 75833 11087 mRNA_2720: 11088 - Hypothetical Protein, at 76182 to 76700 11088 mRNA_2721: 11089 - BLAST metallophosphoesterase domain-containing protein [Muc..., at 76876 to 78981 11089

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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75,541 + 11087 mRNA_2719 0.84 -1.2
75,703 - -0.3
75,817 + 2.0
75,820 - -0.6
75,826 - 1.5
75,841 + 0.4
75,842 + 1.0
75,845 + 0.5
75,848 + 0.1
75,851 + -0.3
76,148 + 0.9
76,294 - 11088 mRNA_2720 0.22 -0.0
76,315 + 11088 mRNA_2720 0.26 0.5
76,317 - 11088 mRNA_2720 0.26 1.2
76,421 - 11088 mRNA_2720 0.46 0.6
76,458 + 11088 mRNA_2720 0.53 0.3
76,459 - 11088 mRNA_2720 0.53 -0.2
76,460 - 11088 mRNA_2720 0.54 0.5
76,468 + 11088 mRNA_2720 0.55 1.5
76,507 + 11088 mRNA_2720 0.63 0.6
76,573 - 11088 mRNA_2720 0.75 0.9
76,605 - 11088 mRNA_2720 0.82 0.2
76,696 - 0.2
76,720 + 0.7
76,720 + 0.0
76,739 + -0.1
76,777 - -0.2
76,782 - -0.4
76,789 + 0.7
76,799 - -0.4
76,809 + 0.0
76,816 - -0.0
76,829 - 0.5
76,893 - -0.1
76,905 + -1.4
76,952 - 0.3
76,965 + -0.3
77,142 + 11089 mRNA_2721 0.13 2.3
77,187 + 11089 mRNA_2721 0.15 0.4
77,189 + 11089 mRNA_2721 0.15 2.7
77,306 + 11089 mRNA_2721 0.20 0.8
77,360 + 11089 mRNA_2721 0.23 1.1
77,363 - 11089 mRNA_2721 0.23 0.7
77,365 - 11089 mRNA_2721 0.23 -0.3
77,382 + 11089 mRNA_2721 0.24 1.3
77,597 - 11089 mRNA_2721 0.34 -1.3