Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3683 to 8144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1 + 1.1
28 + 2.6
28 + 2.4
37 + 0.1
37 + -0.3
38 + 1.1
44 + 0.1
48 - 0.8
49 + 0.1
49 + 0.5
49 + -0.7
49 + 1.1
49 + 1.0
49 + 0.3
49 - -1.4
52 + 0.8
54 - -0.2
54 - 1.5
58 + 0.2
62 + 1.3
70 - 1.7
73 + 0.0
74 - 1.0
74 + 0.8
112 - 0.1
120 - -0.3
138 + 0.8
142 + -1.5
142 + -1.0
142 + 0.2
144 + 1.1
145 - 0.4
147 + -0.6
152 + 0.2
159 + 3.3
159 - 0.3
163 + -0.7
169 - 0.3
170 + 1.6
171 - 2.1
173 + -0.2
175 - 0.2
176 + 0.6
177 + 0.6
183 + 0.6
193 + 0.5
205 + -0.0
231 + 2.2
232 + 0.6
235 - -2.8
252 - 0.1
259 + -0.3
259 + 0.8
259 + 2.4
262 - 0.2
269 + -0.3
273 + -0.3
275 - -0.5
289 + 1.6
299 + -0.1
312 - 0.2
339 + 0.9
352 + 0.2
357 + 1.4
358 + 0.5
368 - 1.6
417 - 1.0
429 + 0.7
434 + 2.3
445 + 1.5
462 + 0.7
462 + 0.9
502 + -0.2
529 - -0.0
540 - 0.6
561 + 0.6
584 + 1.5
584 - 1.5
584 + -1.2
633 + 0.5
636 + 0.9
646 + 1.2
703 - -0.7
736 - 0.2
772 - 11054 mRNA_2686 0.10 -0.4
845 - 11054 mRNA_2686 0.13 0.0
871 + 11054 mRNA_2686 0.14 1.2
911 + 11054 mRNA_2686 0.16 0.8
919 - 11054 mRNA_2686 0.16 0.1
922 + 11054 mRNA_2686 0.16 -0.2
937 - 11054 mRNA_2686 0.17 -0.2
946 - 11054 mRNA_2686 0.17 2.8
1,039 + 11054 mRNA_2686 0.21 0.7
1,042 - 11054 mRNA_2686 0.21 1.3
1,056 + 11054 mRNA_2686 0.21 1.7
1,056 + 11054 mRNA_2686 0.21 0.3
1,059 - 11054 mRNA_2686 0.21 0.5
1,059 - 11054 mRNA_2686 0.21 0.7
1,079 + 11054 mRNA_2686 0.22 0.4
1,089 + 11054 mRNA_2686 0.22 1.4
1,090 - 11054 mRNA_2686 0.22 0.4
1,099 - 11054 mRNA_2686 0.23 1.4
1,116 - 11054 mRNA_2686 0.24 0.1
1,219 - 11054 mRNA_2686 0.28 -0.5
1,230 + 11054 mRNA_2686 0.28 2.3
1,258 - 11054 mRNA_2686 0.29 -0.2
1,270 - 11054 mRNA_2686 0.29 2.3
1,272 + 11054 mRNA_2686 0.30 1.8
1,324 + 11054 mRNA_2686 0.32 -0.2
1,351 + 11054 mRNA_2686 0.33 -0.8
1,464 + 11054 mRNA_2686 0.37 -0.9
1,508 + 11054 mRNA_2686 0.39 -0.6
1,514 - 11054 mRNA_2686 0.39 -0.8
1,611 + 11054 mRNA_2686 0.43 2.2
1,642 + 11054 mRNA_2686 0.44 0.8
1,671 + 11054 mRNA_2686 0.45 -1.2
1,680 + 11054 mRNA_2686 0.45 2.5
1,683 - 11054 mRNA_2686 0.46 0.5
1,684 + 11054 mRNA_2686 0.46 2.8
1,699 + 11054 mRNA_2686 0.46 1.3
1,836 + 11054 mRNA_2686 0.51 3.3
1,912 + 11054 mRNA_2686 0.54 2.3
1,961 - 11054 mRNA_2686 0.56 -0.1
2,068 - 11054 mRNA_2686 0.60 -2.6
2,071 - 11054 mRNA_2686 0.61 -0.0
2,079 + 11054 mRNA_2686 0.61 0.3
2,096 - 11054 mRNA_2686 0.62 0.1
2,112 + 11054 mRNA_2686 0.62 0.3
2,128 + 11054 mRNA_2686 0.63 -0.4
2,140 + 11054 mRNA_2686 0.63 0.4
2,141 - 11054 mRNA_2686 0.63 0.3
2,158 + 11054 mRNA_2686 0.64 -1.9
2,196 + 11054 mRNA_2686 0.65 -0.4
2,238 + 11054 mRNA_2686 0.67 1.7
2,250 - 11054 mRNA_2686 0.67 0.2
2,271 + 11054 mRNA_2686 0.68 0.5
2,404 - 11054 mRNA_2686 0.73 -2.0
2,419 + 11054 mRNA_2686 0.74 1.5
2,442 - 11054 mRNA_2686 0.75 1.5
2,444 - 11054 mRNA_2686 0.75 -0.6
2,534 - 11054 mRNA_2686 0.79 -1.2
2,547 - 11054 mRNA_2686 0.79 1.6
2,564 + 11054 mRNA_2686 0.80 0.2
2,685 - 11054 mRNA_2686 0.84 -0.0
2,806 + 11054 mRNA_2686 0.89 -1.7
2,806 - 11054 mRNA_2686 0.89 -1.6
2,814 - 11054 mRNA_2686 0.89 -0.2
2,938 + -0.7
2,971 + 2.2
2,984 - -0.7
3,056 - -1.1
3,090 + -0.9
3,127 + 2.9
3,135 - -0.4
3,141 + 1.6
3,282 + 0.5
3,380 + 1.1
3,409 - 0.4