Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2581

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948 mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494471 to 495097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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492,042 + 10948 mRNA_2580 0.81 0.8
492,146 - 10948 mRNA_2580 0.88 2.1
492,187 - -0.6
492,204 - 0.2
492,286 - -0.4
492,300 - 0.0
492,595 + -0.2
492,607 + -1.9
492,609 - -1.4
492,614 + -0.2
492,630 + 2.2
492,657 - 0.0
492,672 - 0.3
492,729 + 0.2
492,762 + 0.4
492,766 - 0.1
492,772 + 0.3
492,775 - 0.3
492,781 - 0.7
492,784 + -1.3
492,799 - 1.8
492,807 + 1.3
492,851 - 1.6
492,930 + 0.4
493,589 + 10949 mRNA_2581 0.44 1.7
493,706 + 10949 mRNA_2581 0.52 1.3
493,878 - 10949 mRNA_2581 0.63 -1.4
494,054 - 10949 mRNA_2581 0.75 -0.1
494,058 + 10949 mRNA_2581 0.75 -0.6
494,156 - 10949 mRNA_2581 0.82 -0.8
494,190 + 10949 mRNA_2581 0.84 -0.5
494,199 + 10949 mRNA_2581 0.85 0.9
494,201 + 10949 mRNA_2581 0.85 0.6
494,232 + 10949 mRNA_2581 0.87 -2.8
494,321 - -0.5
494,326 - 0.0
494,479 - 0.3
494,633 + 10950 mRNA_2582 0.26 0.2
494,638 - 10950 mRNA_2582 0.27 1.9
494,651 - 10950 mRNA_2582 0.29 0.1
494,654 + 10950 mRNA_2582 0.29 -0.9
494,675 - 10950 mRNA_2582 0.33 1.2
494,680 + 10950 mRNA_2582 0.33 -1.4
494,765 - 10950 mRNA_2582 0.47 -0.1
494,769 - 10950 mRNA_2582 0.48 -0.1
494,887 - 10950 mRNA_2582 0.66 2.9
494,926 + 10950 mRNA_2582 0.73 0.9
494,937 + 10950 mRNA_2582 0.74 2.5
494,952 - 10950 mRNA_2582 0.77 0.5
495,085 + 2.0
495,119 - -2.2
495,263 + 2.2
495,401 + -0.2