Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2554

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428822 to 431100 10921 mRNA_2554: 10922 - BLAST Amino acid/polyamine transporter I [Sporothrix insect..., at 431704 to 432671 10922 mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432774 to 435316 10923

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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430,765 - 10921 mRNA_2553 0.85 -0.1
430,814 - 10921 mRNA_2553 0.87 -1.0
430,833 + 10921 mRNA_2553 0.88 0.3
430,918 - 1.4
431,305 - -0.1
431,314 + 0.7
431,333 + 0.2
431,338 - 2.0
431,613 - 1.6
431,777 - 1.7
432,238 + 10922 mRNA_2554 0.55 -3.4
432,322 + 10922 mRNA_2554 0.64 -0.1
432,342 + 10922 mRNA_2554 0.66 2.1
432,351 - 10922 mRNA_2554 0.67 -0.8
432,357 + 10922 mRNA_2554 0.67 0.2
432,403 - 10922 mRNA_2554 0.72 -0.4
432,588 - 0.5