Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2520

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342708 to 344522 10887 mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345046 to 346549 10888 mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346896 to 348680 10889

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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344,049 - 10887 mRNA_2519 0.74 0.7
344,212 + 10887 mRNA_2519 0.83 0.8
344,385 + -1.0
344,387 - -0.3
344,664 - -1.0
344,680 - 0.4
344,688 + -0.0
344,774 - -2.2
344,814 + -1.1
344,831 - -1.4
344,968 + -0.1
345,099 - -0.2
345,142 - -0.9
345,355 - 10888 mRNA_2520 0.21 0.1
345,406 - 10888 mRNA_2520 0.24 -1.3
345,420 + 10888 mRNA_2520 0.25 -0.5
345,546 - 10888 mRNA_2520 0.33 -1.4
345,567 + 10888 mRNA_2520 0.35 -0.1
345,667 - 10888 mRNA_2520 0.41 -0.5
345,703 + 10888 mRNA_2520 0.44 0.9
346,236 + 10888 mRNA_2520 0.79 2.4
346,239 - 10888 mRNA_2520 0.79 -1.8
346,712 + 1.1