Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2509

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316713 to 320410 10876 mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320843 to 322229 10877 mRNA_2510: 10878 - K09272 SSRP1 structure-specific recognition protein 1, at 322447 to 324875 10878

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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319,925 - 10876 mRNA_2508 0.87 2.8
320,162 - 0.5
320,246 - 1.1
320,343 - -1.1
320,347 + 2.3
320,371 - 2.5
320,406 + 0.6
320,431 - -0.1
320,431 - -0.7
320,622 - -0.2
320,623 + 0.7
320,662 + -0.8
320,791 - 0.9
320,942 - -1.8
320,946 + -0.0
321,253 + 10877 mRNA_2509 0.30 -0.3
321,258 - 10877 mRNA_2509 0.30 -1.3
321,351 - 10877 mRNA_2509 0.37 1.1
322,112 - -0.1
322,138 + 0.1
322,227 + -0.3
322,262 - -0.5
322,280 - 1.2
322,392 - 0.1
322,404 + -0.4
322,423 - 0.4