Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2505

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2504: 10872 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 309895 to 311581 10872 mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311631 to 312608 10873 mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312607 to 314311 10874

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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310,631 + 10872 mRNA_2504 0.44 -0.0
310,754 - 10872 mRNA_2504 0.51 1.1
310,872 - 10872 mRNA_2504 0.58 0.1
310,919 - 10872 mRNA_2504 0.61 0.3
311,187 + 10872 mRNA_2504 0.77 1.0
311,188 + 10872 mRNA_2504 0.77 0.5
311,529 + 2.2
311,620 - -0.2
311,769 + 10873 mRNA_2505 0.14 -0.2
312,350 - 10873 mRNA_2505 0.74 1.1
312,469 + 10873 mRNA_2505 0.86 1.3
312,584 - 1.7
312,605 - 1.7
312,607 + -0.3
312,636 + 0.1
312,640 - 0.1
312,778 + 10874 mRNA_2506 0.10 -0.0
312,784 + 10874 mRNA_2506 0.10 0.4
312,784 - 10874 mRNA_2506 0.10 -0.7
312,791 + 10874 mRNA_2506 0.11 -1.0
313,047 - 10874 mRNA_2506 0.26 0.6
313,071 - 10874 mRNA_2506 0.27 1.3
313,083 - 10874 mRNA_2506 0.28 -1.4
313,245 - 10874 mRNA_2506 0.37 -1.0
313,333 - 10874 mRNA_2506 0.43 -1.4
313,363 - 10874 mRNA_2506 0.44 0.8
313,381 + 10874 mRNA_2506 0.45 0.6
313,388 + 10874 mRNA_2506 0.46 -0.5
313,409 + 10874 mRNA_2506 0.47 1.3
313,525 + 10874 mRNA_2506 0.54 -0.5
313,526 - 10874 mRNA_2506 0.54 0.3