Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2500

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2499: 10867 - BLAST secreted protein [Moniliophthora roreri MCA 2997], at 297402 to 298448 10867 mRNA_2500: 10868 - Hypothetical Protein, at 299018 to 301561 10868 mRNA_2501: 10869 - K00852 rbsK, RBKS ribokinase, at 301795 to 303224 10869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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298,505 + 0.3
298,633 + -0.8
298,760 + -0.4
298,761 + -0.6
298,802 + 1.5
298,802 + -1.3
298,932 + 0.2
298,942 + 1.9
298,947 + -0.9
299,263 + -0.4
300,540 + 10868 mRNA_2500 0.60 1.1
300,693 + 10868 mRNA_2500 0.66 -1.3
300,815 - 10868 mRNA_2500 0.71 0.0
300,845 + 10868 mRNA_2500 0.72 0.0
301,417 - 0.3
301,431 + -0.8
301,587 + -2.0
301,714 - 0.1
301,853 - 1.9
301,996 + 10869 mRNA_2501 0.14 0.5
302,133 + 10869 mRNA_2501 0.24 -0.9
302,255 + 10869 mRNA_2501 0.32 0.9
302,418 - 10869 mRNA_2501 0.44 0.3