Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2478

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2477: 10845 - K00560 thyA, TYMS thymidylate synthase, at 242038 to 243139 10845 mRNA_2478: 10846 - K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6, at 243520 to 246165 10846 mRNA_2479: 10847 - Hypothetical Protein, at 246856 to 249133 10847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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243,285 + -0.4
243,304 - 0.1
243,308 + -0.5
243,398 - -0.1
243,434 - -0.1
243,438 + 1.6
243,458 + -0.3
243,458 + 0.8
243,466 + -0.9
243,600 - 0.4
243,746 + 0.5
244,266 - 10846 mRNA_2478 0.28 0.1
244,345 - 10846 mRNA_2478 0.31 2.6
244,498 - 10846 mRNA_2478 0.37 2.0
245,062 + 10846 mRNA_2478 0.58 2.1
245,087 + 10846 mRNA_2478 0.59 0.9
245,165 - 10846 mRNA_2478 0.62 -0.5
245,357 - 10846 mRNA_2478 0.69 1.2
245,507 - 10846 mRNA_2478 0.75 1.1
245,816 - 10846 mRNA_2478 0.87 -1.4
245,930 + -0.2
245,932 - 1.9
245,940 + 0.8
245,944 - -1.9
246,209 + 0.8
246,238 - 0.5
246,247 - 0.4
246,251 + 2.9
246,253 - -0.7
246,253 + 1.3
246,383 + 2.4
246,391 - 1.6
246,394 + -0.5
246,525 - 2.3
246,533 - -1.2
246,537 - 0.8
246,856 - -0.8
246,862 - 0.0
247,101 - 10847 mRNA_2479 0.11 0.6