Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2474

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2473: 10841 - K01610 E4.1.1.49, pckA phosphoenolpyruvate carboxykinase (ATP), at 230136 to 233558 10841 mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234258 to 235956 10842 mRNA_2475: 10843 - BLAST CAMK protein kinase [Microbotryum lychnidis-dioicae p..., at 236278 to 238719 10843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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233,258 + 0.7
233,258 - 1.3
233,258 + -0.0
233,260 + 1.2
233,303 - 1.5
233,304 + 1.4
233,304 + -0.3
233,309 + 1.3
233,309 + 1.4
233,312 + -1.4
233,318 - -0.2
233,324 - 0.3
233,325 - 1.8
233,327 + 1.8
233,330 - 0.5
233,331 - -0.2
233,331 - -0.4
233,334 + 0.0
233,338 - -0.2
233,340 + -0.2
233,346 - 0.9
233,347 + 1.0
233,349 + -0.5
233,353 + 0.5
233,356 + -0.1
233,356 - 1.5
233,359 - 0.1
233,360 - -0.0
233,361 - -0.8
233,370 - 1.6
233,374 + -0.9
233,385 + 1.7
233,386 - 0.3
233,485 - -0.3
233,502 - 1.7
233,508 + 1.1
233,513 + -1.2
233,514 - 0.6
233,639 + -0.2
233,830 + 3.1
233,860 - 0.8
233,926 + -0.4
233,950 - -0.3
233,966 + 0.3
234,238 + 1.2
234,907 - 10842 mRNA_2474 0.38 0.3
234,952 - 10842 mRNA_2474 0.41 -0.0
235,024 - 10842 mRNA_2474 0.45 -2.4
235,152 - 10842 mRNA_2474 0.53 0.4
235,234 - 10842 mRNA_2474 0.57 -0.4
235,296 - 10842 mRNA_2474 0.61 0.4
235,303 - 10842 mRNA_2474 0.62 0.3
235,346 + 10842 mRNA_2474 0.64 1.2
235,725 - 10842 mRNA_2474 0.86 2.4
235,738 - 10842 mRNA_2474 0.87 0.5
236,183 - -1.0
236,291 + 0.3
236,410 - 1.7
236,472 - 0.0
236,473 + -0.8
236,488 + 1.7
236,843 - 10843 mRNA_2475 0.23 -0.7