Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2444

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811 mRNA_2444: 10812 - KOG4505 Na+/H+ antiporter, at 145860 to 150269 10812

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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145,043 - 10811 mRNA_2443 0.78 0.4
145,046 + 10811 mRNA_2443 0.79 0.2
145,602 - -1.5
145,618 - -0.4
145,621 - 1.0
145,623 + -0.2
145,625 - 0.9
145,625 + 0.2
145,637 - 0.5
145,639 - 0.3
145,643 - -1.6
145,652 + -0.9
145,658 - -1.1
145,669 - 1.7
145,671 - 0.6
145,678 + 0.9
145,704 + -0.3
145,792 + 1.4
145,800 - 0.3
145,821 + -0.4
145,949 + -0.7
146,110 + -2.5
146,252 - -1.3
146,695 - 10812 mRNA_2444 0.19 -1.9
146,703 + 10812 mRNA_2444 0.19 2.1
146,990 + 10812 mRNA_2444 0.26 -0.9
147,406 - 10812 mRNA_2444 0.35 -1.8
147,437 + 10812 mRNA_2444 0.36 -2.8
147,553 + 10812 mRNA_2444 0.38 -2.3
148,576 + 10812 mRNA_2444 0.62 0.2
148,845 + 10812 mRNA_2444 0.68 -1.0
149,330 - 10812 mRNA_2444 0.79 0.7
149,651 - 10812 mRNA_2444 0.86 -0.4
150,112 - 0.7
150,113 - -1.3
150,237 - 0.0
150,369 + 1.9
150,404 - -0.3
150,411 + 0.2
150,419 + 0.4
150,421 + -1.9
150,432 + 0.6
150,546 - -0.8
150,574 + 1.6
150,574 + -0.3
150,581 - -0.5
150,608 + -0.2
150,742 + 0.6
150,885 + 0.3