Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2442

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138011 to 140441 10809 mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140857 to 142808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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140,039 - 10809 mRNA_2441 0.83 1.6
140,190 - 10809 mRNA_2441 0.90 0.7
140,214 + -0.6
140,317 - 0.6
140,389 + -0.1
140,551 - -0.1
140,556 + -1.5
140,584 - -0.6
140,625 - 1.4
140,659 - 0.7
140,659 + 1.0
140,663 + 1.8
140,664 + 0.5
140,670 - 0.9
140,679 - -1.7
140,697 + -0.3
140,729 - -0.2
140,729 - -0.0
140,729 - 0.1
140,730 - -0.5
140,735 - -0.1
140,752 + 0.7
140,752 - 0.3
140,781 - -0.1
140,787 + 0.1
140,827 - -0.4
140,955 - 0.6
141,013 + 1.6
141,694 - 10810 mRNA_2442 0.43 0.2
142,122 + 10810 mRNA_2442 0.65 0.2
142,244 - 10810 mRNA_2442 0.71 -1.7
142,246 + 10810 mRNA_2442 0.71 0.6
142,425 - 10810 mRNA_2442 0.80 1.4
142,500 + 10810 mRNA_2442 0.84 0.9
142,504 - 10810 mRNA_2442 0.84 0.9
142,670 - -0.0
142,680 + 1.2
142,802 - 1.3
142,810 - 0.6
142,819 + 1.5
142,825 + 1.1
142,832 + 1.7
142,847 + -0.2
142,926 + 2.2
143,001 - 1.6
143,140 - -1.0
143,140 + 0.1
143,140 - 1.3
143,140 - -0.4
143,144 - 1.0
143,146 + -0.7
143,147 + -0.6
143,150 + -0.2
143,151 - 1.5
143,164 - -0.1
143,167 + -0.7
143,266 + 0.5
143,279 + 0.1
143,284 - 0.5
143,294 + -0.6
143,299 - 0.1
143,302 + 0.6
143,413 - 0.2
143,440 + 1.2
143,578 + 10811 mRNA_2443 0.11 2.4
143,578 + 10811 mRNA_2443 0.11 -0.2
143,597 - 10811 mRNA_2443 0.12 2.2
143,755 - 10811 mRNA_2443 0.19 -0.4
143,762 + 10811 mRNA_2443 0.19 0.8