Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2431

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2430: 10798 - K09467 MIG zinc-finger protein CreA/MIG, at 106611 to 109400 10798 mRNA_2431: 10799 - Hypothetical Protein, at 109919 to 110380 10799 mRNA_2432: 10800 - K20028 ZDHHC2_15_20 palmitoyltransferase ZDHHC2/15/20, at 111348 to 112998 10800

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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109,052 - 10798 mRNA_2430 0.87 0.1
109,064 + 10798 mRNA_2430 0.88 -0.6
109,069 + 10798 mRNA_2430 0.88 0.4
109,198 - -1.6
109,221 - 0.8
109,252 + -0.9
109,362 - -2.2
109,374 + -2.2
109,380 + 0.1
109,382 + -1.4
109,396 + -0.3
109,405 - -1.3
109,521 - -2.8
109,534 + 0.2
109,551 + -0.6
109,651 - -0.5
109,654 - 0.7
109,657 - -3.1
109,665 - 2.2
109,674 - -0.7
109,674 + 0.5
109,675 + 0.2
109,678 - 0.5
109,680 - -1.8
109,680 - -0.4
109,685 + 0.2
109,689 - 1.1
109,693 - -0.0
109,699 + 0.1
109,700 - 1.6
109,704 - -0.0
109,708 + 0.3
109,710 + 1.7
109,826 - -1.4
109,833 + -0.2
109,850 - -0.3
109,856 - -0.1
109,986 - 10799 mRNA_2431 0.15 0.3
110,000 - 10799 mRNA_2431 0.18 -0.4
110,006 + 10799 mRNA_2431 0.19 -1.9
110,013 + 10799 mRNA_2431 0.20 -0.2
110,033 - 10799 mRNA_2431 0.25 0.9
110,038 + 10799 mRNA_2431 0.26 -0.3
110,050 - 10799 mRNA_2431 0.28 1.4
110,055 - 10799 mRNA_2431 0.29 -0.4
110,164 + 10799 mRNA_2431 0.53 -0.1
110,586 + -0.9
110,764 + 0.6
110,933 + -0.0
110,965 - 0.9
110,985 - 1.4
110,994 - -0.7
111,014 + -0.6
111,139 + 0.8
111,148 + 0.1
111,163 - 0.3
111,169 - -0.1
111,169 + 0.1
111,183 + -0.2
111,319 - 0.1
111,324 + 1.3