Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2418

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2417: 10785 - SUPERFAMILY--SSF52047, at 74792 to 76110 10785 mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77070 to 79296 10786 mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79410 to 80151 10787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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76,075 - -0.4
76,116 - 0.7
76,120 - 0.3
76,168 - 0.2
76,252 - -0.9
76,258 - 0.3
76,267 + 0.4
76,425 - 2.4
76,446 + 0.8
76,447 - -0.4
76,460 + -0.4
76,557 - 0.8
76,594 - -0.3
76,974 + -0.4
77,573 - 10786 mRNA_2418 0.23 0.6
77,585 + 10786 mRNA_2418 0.23 -0.5
77,683 - 10786 mRNA_2418 0.28 0.5
77,851 + 10786 mRNA_2418 0.35 -0.5
77,868 + 10786 mRNA_2418 0.36 1.0
78,000 + 10786 mRNA_2418 0.42 1.1
78,187 - 10786 mRNA_2418 0.50 0.6
78,319 + 10786 mRNA_2418 0.56 0.7
78,411 - 10786 mRNA_2418 0.60 -0.1
78,849 + 10786 mRNA_2418 0.80 0.7
78,850 + 10786 mRNA_2418 0.80 0.7
78,860 + 10786 mRNA_2418 0.80 0.9
78,861 - 10786 mRNA_2418 0.80 2.3
78,862 - 10786 mRNA_2418 0.80 1.3
78,869 + 10786 mRNA_2418 0.81 2.0
79,010 + 10786 mRNA_2418 0.87 1.9
79,075 - 1.7
79,315 - -1.2
79,322 - 0.1
79,745 - 10787 mRNA_2419 0.45 0.1
79,768 + 10787 mRNA_2419 0.48 0.2
79,852 - 10787 mRNA_2419 0.60 -1.1
80,030 - 10787 mRNA_2419 0.84 1.8
80,044 - 10787 mRNA_2419 0.85 0.2