Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2402

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2401: 10769 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 31394 to 33493 10769 mRNA_2402: 10770 - K07870 RHOT1, ARHT1 Ras homolog gene family, member T1, at 33666 to 36845 10770 mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37174 to 37596 10771

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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32,695 - 10769 mRNA_2401 0.62 1.7
32,699 + 10769 mRNA_2401 0.62 0.4
32,711 + 10769 mRNA_2401 0.63 0.4
32,731 - 10769 mRNA_2401 0.64 0.7
32,819 - 10769 mRNA_2401 0.68 1.3
32,834 - 10769 mRNA_2401 0.69 0.7
32,857 + 10769 mRNA_2401 0.70 -0.7
33,000 - 10769 mRNA_2401 0.76 0.7
33,005 - 10769 mRNA_2401 0.77 -0.6
33,008 - 10769 mRNA_2401 0.77 0.0
33,143 - 10769 mRNA_2401 0.83 -0.6
33,153 + 10769 mRNA_2401 0.84 0.3
33,278 + 10769 mRNA_2401 0.90 0.7
33,284 - 0.2
33,290 - 0.5
33,310 + 1.2
33,426 + 0.3
33,439 - 0.1
33,442 - 0.6
33,485 + -0.6
33,592 - -0.5
33,598 + 0.5
33,738 - 2.0
33,752 + -0.2
33,874 - 2.1
34,149 - 10770 mRNA_2402 0.15 -0.5
34,180 - 10770 mRNA_2402 0.16 -0.8
34,349 - 10770 mRNA_2402 0.21 -0.4
34,353 - 10770 mRNA_2402 0.22 1.3
34,378 - 10770 mRNA_2402 0.22 0.9
34,648 + 10770 mRNA_2402 0.31 0.1
35,532 - 10770 mRNA_2402 0.59 1.0
35,639 - 10770 mRNA_2402 0.62 -0.3
35,705 - 10770 mRNA_2402 0.64 1.5
35,954 - 10770 mRNA_2402 0.72 1.2
36,477 + 10770 mRNA_2402 0.88 1.1
36,512 + 10770 mRNA_2402 0.89 2.3
36,538 - 1.4
36,831 - 1.3
36,945 - 0.6
36,951 + 0.3
36,958 + 3.3
36,963 + -1.0
36,963 + 0.6
36,964 - 0.4
36,989 + 0.7
37,071 + 0.1
37,122 - 0.3
37,401 + 10771 mRNA_2403 0.54 0.1
37,579 + 1.5
37,802 + 0.6
37,808 - 1.5