Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2400

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2399: 10767 - Hypothetical Protein, at 25510 to 29581 10767 mRNA_2400: 10768 - Hypothetical Protein, at 29855 to 31003 10768 mRNA_2401: 10769 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 31394 to 33493 10769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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29,022 + 10767 mRNA_2399 0.86 -0.2
29,148 - 10767 mRNA_2399 0.89 -0.3
29,148 - 10767 mRNA_2399 0.89 0.2
29,162 + 10767 mRNA_2399 0.90 2.1
29,205 + 1.4
29,207 + 0.4
29,243 - 2.2
29,343 - -0.1
29,558 - 0.8
29,638 + 0.5
29,638 + -0.2
29,743 + 1.0
29,920 + 1.3
29,921 + -0.1
29,995 - 10768 mRNA_2400 0.12 0.5
29,997 + 10768 mRNA_2400 0.12 -0.2
30,089 - 10768 mRNA_2400 0.20 0.9
30,104 + 10768 mRNA_2400 0.22 -0.8
30,125 + 10768 mRNA_2400 0.23 0.2
30,209 - 10768 mRNA_2400 0.31 1.0
30,209 - 10768 mRNA_2400 0.31 0.8
30,216 - 10768 mRNA_2400 0.31 -0.1
30,222 - 10768 mRNA_2400 0.32 -0.3
30,278 + 10768 mRNA_2400 0.37 0.2
30,460 + 10768 mRNA_2400 0.53 0.0
30,504 - 10768 mRNA_2400 0.56 0.3
30,522 + 10768 mRNA_2400 0.58 0.4
30,534 - 10768 mRNA_2400 0.59 0.8
30,571 - 10768 mRNA_2400 0.62 0.4
30,787 + 10768 mRNA_2400 0.81 0.5
31,081 - 1.8
31,109 + -0.2
31,115 - 0.0
31,115 - 0.0
31,115 - -1.5
31,124 + 0.4
31,290 - 0.0
31,419 + 1.2
31,495 - -1.1
31,495 + -0.5
31,529 + 0.1
31,530 - 1.7
31,570 - 2.2
31,576 - 0.3
31,576 + 2.2
31,691 + 10769 mRNA_2401 0.14 0.3
31,848 + 10769 mRNA_2401 0.22 -0.2
31,887 + 10769 mRNA_2401 0.23 -2.1