Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2354

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689972 to 692124 10721 mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692257 to 694787 10722 mRNA_2355: 10723 - Hypothetical Protein, at 694855 to 695610 10723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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691,276 + 10721 mRNA_2353 0.61 -0.5
691,690 - 10721 mRNA_2353 0.80 -0.3
691,701 + 10721 mRNA_2353 0.80 0.6
691,842 - 10721 mRNA_2353 0.87 0.2
691,961 + 3.2
691,997 - -0.3
692,138 + 1.7
692,142 - 1.4
692,257 - 0.7
692,258 - -0.0
692,260 - 0.1
692,302 + -0.2
692,306 + 0.3
692,311 + -0.6
692,320 + 1.2
692,320 - -0.0
692,334 + 0.3
692,461 + 1.7
692,463 + 0.9
692,463 + 0.2
692,469 - 0.2
692,483 - -0.8
692,493 - -0.1
692,500 + -0.2
692,772 - 10722 mRNA_2354 0.20 -1.4
693,084 + 10722 mRNA_2354 0.33 0.2
693,322 - 10722 mRNA_2354 0.42 2.0
693,327 + 10722 mRNA_2354 0.42 -0.7
693,335 - 10722 mRNA_2354 0.43 0.4
693,922 - 10722 mRNA_2354 0.66 -1.3
694,058 - 10722 mRNA_2354 0.71 -0.1
694,223 - 10722 mRNA_2354 0.78 1.1
694,326 + 10722 mRNA_2354 0.82 -0.0
694,345 - 10722 mRNA_2354 0.82 -1.3
695,221 - 10723 mRNA_2355 0.48 -0.7
695,657 - -0.3