Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2342

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2341: 10709 - K03021 RPC2, POLR3B DNA-directed RNA polymerase III subunit RPC2, at 663077 to 667244 10709 mRNA_2342: 10710 - Hypothetical Protein, at 667459 to 669644 10710 mRNA_2343: 10711 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 669815 to 670967 10711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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667,532 - 0.2
667,551 - 0.7
667,673 + -0.1
667,692 - 10710 mRNA_2342 0.11 0.8
667,712 - 10710 mRNA_2342 0.12 0.1
667,715 + 10710 mRNA_2342 0.12 0.3
667,721 + 10710 mRNA_2342 0.12 0.1
667,729 - 10710 mRNA_2342 0.12 1.0
667,799 - 10710 mRNA_2342 0.16 0.7
667,846 - 10710 mRNA_2342 0.18 0.0
667,965 - 10710 mRNA_2342 0.23 -1.1
667,976 + 10710 mRNA_2342 0.24 0.6
667,994 - 10710 mRNA_2342 0.24 -0.5
668,273 - 10710 mRNA_2342 0.37 -0.4
668,282 + 10710 mRNA_2342 0.38 0.6
668,559 + 10710 mRNA_2342 0.50 -1.5
669,314 - 10710 mRNA_2342 0.85 0.5
669,337 - 10710 mRNA_2342 0.86 0.8
669,450 - 1.2
669,693 + 0.2
670,027 - 10711 mRNA_2343 0.18 2.4
670,315 + 10711 mRNA_2343 0.43 0.1
670,592 + 10711 mRNA_2343 0.67 -1.6